Tpit020074.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thaumetopoea pityocampa
Gene Symbol
-
Assembly
GCA_017165845.1
Location
WUAW01023844.1:1-13620[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.43 39 5.6 3.5 3 23 192 213 191 213 0.97
2 16 0.05 4.6 8.6 0.1 1 20 221 240 221 242 0.94
3 16 0.0096 0.89 10.8 0.6 2 23 252 273 251 273 0.94
4 16 2.9 2.7e+02 3.0 0.6 1 23 289 312 289 312 0.84
5 16 0.026 2.4 9.4 4.6 1 23 321 344 321 344 0.94
6 16 0.99 92 4.5 0.3 2 23 356 378 355 378 0.92
7 16 0.19 18 6.7 1.0 2 21 421 440 420 443 0.80
8 16 2.5e-05 0.0023 18.9 1.9 1 23 477 499 477 499 0.97
9 16 9.5e-05 0.0088 17.1 1.7 1 23 506 528 506 528 0.98
10 16 6.4e-05 0.006 17.7 2.3 1 23 533 555 533 555 0.96
11 16 0.00086 0.079 14.1 1.4 1 23 561 583 561 583 0.98
12 16 2.1e-06 0.00019 22.4 1.6 1 23 589 611 589 611 0.97
13 16 8.5e-05 0.0078 17.3 2.8 2 23 618 639 618 639 0.98
14 16 0.00084 0.078 14.1 0.5 2 23 647 669 646 669 0.97
15 16 0.00047 0.044 14.9 0.1 1 23 674 696 674 696 0.98
16 16 0.00066 0.062 14.5 3.0 1 23 702 725 702 725 0.98

Sequence Information

Coding Sequence
NNGGATCCTCCATTTGTTGTTTCTGGCGCTGACCTTAGGACTGAGTTTATTGAGGAACAGTTGAAGAATCAATCCAAAGTTGGTTACATGGATGTGGAACCTAAAATTAATGAAAGTAGTCAAGGATCAGAAATCGCTGGAGACCCAAAAGAGTTGCTGAAAGTTTTAATACCAGAGATCAAACATGAAGATATATTTGGTGATGAGATGAAAGATGATGAGGTGAAAGATGATGAGATGAAAGATGATGTGAATACTGATAATAAAGTTGATAACAGGAAGGAAGAGTCAAAAGATGATGAAGATGACNNNNNNNNNNTGAAAGATGATGTGAATACTGATAATAAAGTTGATAACAGGAAGGAAGAGTCAAAAGATGATGAAGATGACCCATCAAAGACATATGATGGTGATCAAGATTTTGATGTCACATTAATGGAGTTAATAGTTCTACGGAAAAGCTACTTTGATTACATCAGTTTGATTTTGACTGATATAAACGCTAATGTGATACCTCAGAATTCAAATATAGATTATGATAAAGTTAACTCGGAGAATCCAGTAGATATATTATGTTCATTGTGTcagacaaattataataaaatgcacCTCTTTACAAGTCATATGATGAAAATGCATTGTGTAAAATGCTTGCCTATGTTTTCATGTAGAGTATGTGCAACAACATTTGATAGTCAGAATGAGCTTGACTCTCATATTACTCAGGAACTTGGCGAGTTTGATGATTTATGGATATGTCAATTCTGTGACAAAGAATTTGATAATAGAGAGTCTACCCGACAACATTTGACAGAGCATTTACAGAGTATAGAATATGACAATTGTTTTAGTCCACATCTAGGTTTTAAATGTAGATATTGTCCAACTCTATTTTGGAATGAGACAGACAGGGAAACACATCAAGTTCGCGCACATTTCCTTAATCATAAAGAAGATTATTATCATTGTTTCAAATGTAAAGAAGTGTTTAGTGAtaagGTGTGGTTTGTCCACCATTACTTGGAGAAGCATAAATCAGAAGATGAGTTCTCCATATACCTCCTGAAGTGCTGCATCTGTAGTTTGGTGCTCCCAAATGTGGCCGATATGCGGAGACATTTTGAAAGCGCTCACCCCGAGGCGAAAAAGGTGTACTGCTCCTTAGACCCTTGCCAGTATAAGCCTCTTAGCCATCGGAAGTCATTCAAATTGCATGTTAAGACGGTgcacggcgcgcgcgcgcggcagGAGCGCGCGGTGGAGTGCCACCTGTGCGGGCGCGAGTTCAacagcgcgcgcgcgtgcgccacCCACGTGGCGCAGTCGCACGGCACCGCCAAGTTTAAGTGCAAGCTGTGCGACGCGCACCTGCACACCAACGACGAACGAAAACTGCACTATCTGATCTGCCACCCCGGACAGCATCCGTTCGAGTGTACGGAGTGTGGGAAATCGTTCCAGTACAAGTCTTCCCTGTACATGCACAAACAGGAACACCAGCCGAATAAAGAGAGCTACACGTGCTCTTACTGCAGCAAGGTGTTCATGAAGCGTGACTCGTTCCGCGAGCACGTACAAATCCACGAGGGGCCGCGTCACGCGTGCTCGTACTGTCCGATGCGGTTCGTCCAGCGTTCGAACATGCTGCGCCATGAACGCCGCCACACCGGCGAGAGGCCGTACGCCTGCCCGCACTGTCCCAGGAACTTCGCCGACAAGGGCGCCTGCACCTCGCATGCcagGACGCACTCCAAGGAAGCCTCATTCGCGTGCATGTACTGTGGTCAAACTTTCGTGCAAAAGTCAAAACTCACCTATCATATTAGAAAGCACACTGGGGAAAATCTGGAGACATGCCCTATATGCTCTAAATTGTTTACGAGCAGATGTTCCTTACGCGAACATATGAAAATACATAATACTAACAAGGAGACAGTGAAGTGTCCATTATGTGATAAGAAGTACCAAGACGACCGCTACATGCTGCGGCACTTGCGCACCGCCCACACACATGGCCGTTACTCTTGTCCGCTGTGCAACAAGCTGTTGTCCAGCCCCACCGGACTACGTAACCACGTCATCACCCATGGCTCCGTTAAGGCTTTCAAGtgTCGACAATGTCCAAAAACTTACTCCGTGAGGCGTACTATGGTGAAACATTTACGACGAAGGCACGGCGTTAAAGGGACAGAGATTAACATTAAAGACTTTTATACACGTTTGGAGCCAAGACAATGTCAATTGGGCCTTGATGAGGACATAATGAACACCATATTCGGACCACCTAAGAAACGACATGATGTACCTATTATTGATTTTGTAAAGGTTCCCAACAACGAAGAGGCTAACGAGAAGTGTGAATCAGAAGAAGAGCAAGAGAGTGACAAAGACAGTGACAGTGATGATAATAGGCCTATTAAAATTGAGAGGGAGTCTGATAGTGAGCAGGATGATACTGAATTGGAGCCTACAGATTTTGTGAGCATAAAGATAGAACCATTGGACGATGATGACCTAACCTAA
Protein Sequence
XDPPFVVSGADLRTEFIEEQLKNQSKVGYMDVEPKINESSQGSEIAGDPKELLKVLIPEIKHEDIFGDEMKDDEVKDDEMKDDVNTDNKVDNRKEESKDDEDDXXXXKDDVNTDNKVDNRKEESKDDEDDPSKTYDGDQDFDVTLMELIVLRKSYFDYISLILTDINANVIPQNSNIDYDKVNSENPVDILCSLCQTNYNKMHLFTSHMMKMHCVKCLPMFSCRVCATTFDSQNELDSHITQELGEFDDLWICQFCDKEFDNRESTRQHLTEHLQSIEYDNCFSPHLGFKCRYCPTLFWNETDRETHQVRAHFLNHKEDYYHCFKCKEVFSDKVWFVHHYLEKHKSEDEFSIYLLKCCICSLVLPNVADMRRHFESAHPEAKKVYCSLDPCQYKPLSHRKSFKLHVKTVHGARARQERAVECHLCGREFNSARACATHVAQSHGTAKFKCKLCDAHLHTNDERKLHYLICHPGQHPFECTECGKSFQYKSSLYMHKQEHQPNKESYTCSYCSKVFMKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRNFADKGACTSHARTHSKEASFACMYCGQTFVQKSKLTYHIRKHTGENLETCPICSKLFTSRCSLREHMKIHNTNKETVKCPLCDKKYQDDRYMLRHLRTAHTHGRYSCPLCNKLLSSPTGLRNHVITHGSVKAFKCRQCPKTYSVRRTMVKHLRRRHGVKGTEINIKDFYTRLEPRQCQLGLDEDIMNTIFGPPKKRHDVPIIDFVKVPNNEEANEKCESEEEQESDKDSDSDDNRPIKIERESDSEQDDTELEPTDFVSIKIEPLDDDDLT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-