Basic Information

Insect: Thaumetopoea pityocampa
Gene Symbol: -
Assembly: GCA_017165845.1
Location: WUAW01006830.1:24276-32071[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00028 0.026 15.7 0.2 1 23 222 244 222 244 0.97

2 10 0.044 4.1 8.7 0.4 2 20 272 290 271 292 0.94

3 10 0.00012 0.011 16.9 0.4 3 23 317 337 315 337 0.96

4 10 1.6e-05 0.0015 19.5 0.2 1 23 341 363 341 363 0.98

5 10 0.016 1.5 10.1 0.6 1 23 368 391 368 391 0.94

6 10 0.24 22 6.4 0.4 1 23 397 420 397 420 0.92

7 10 6.5e-05 0.0061 17.6 0.7 1 23 427 450 427 450 0.98

8 10 2.6e-05 0.0024 18.9 3.2 1 23 456 478 456 478 0.98

9 10 6.3e-05 0.0058 17.7 6.4 1 23 484 506 484 506 0.98

10 10 2.8e-06 0.00026 21.9 1.0 1 23 512 534 512 534 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00028	0.026	15.7	0.2	1	23	222	244	222	244	0.97
2	10	0.044	4.1	8.7	0.4	2	20	272	290	271	292	0.94
3	10	0.00012	0.011	16.9	0.4	3	23	317	337	315	337	0.96
4	10	1.6e-05	0.0015	19.5	0.2	1	23	341	363	341	363	0.98
5	10	0.016	1.5	10.1	0.6	1	23	368	391	368	391	0.94
6	10	0.24	22	6.4	0.4	1	23	397	420	397	420	0.92
7	10	6.5e-05	0.0061	17.6	0.7	1	23	427	450	427	450	0.98
8	10	2.6e-05	0.0024	18.9	3.2	1	23	456	478	456	478	0.98
9	10	6.3e-05	0.0058	17.7	6.4	1	23	484	506	484	506	0.98
10	10	2.8e-06	0.00026	21.9	1.0	1	23	512	534	512	534	0.98

Sequence Information

Coding Sequence: ATGGATACAGAGATAATGGTGGAAATGTTGCCGCAGCTCGGCGTGTGCAATTTATGTTTGAACGAAGGCCCAGTAAAGAGTATGCTGATCGGTTACAAACATAATGGAGTCCTGGAAACTTACAATGATATGTTGATGAAGTGCTTCTCCATAGACTTATCACTGCTACATTTAGGTGACGTGAAGAGGGTTATATGTGAGCGGTGTATTGCCCAGTTGAGAGACTCCGTGCTGTTTAAAAAGCAGGTCGAAGCCTCGTTGCGAAGCCTTGAAGCCAATGTGAAGCTGAACAAACATGAGAAGGAGATCGTAGATGATATGAAGGATGAACCGACCGCCGTCACGTTGTTCAACGACGACTTCCCCGGCGACGACGGTGACGGTGATGTACATAAACATGAGAAGGAGATCGTAGATGATATGAAGGATGAACCGACCGCCGTCACGTTGTTCAACGACGACTTCCCCGGCGACGACGGTGACGGTGAACATGTAATTTTAGCAGATATCAAGAAGGAGCCTACAGAATGTAGACGCAAGGGTCGCAGTAAACCTCTGTCGAAGAAACTAAAAGTACTAAACAAAGTAGTTGATATAAAAGAAACGGAAGTCATGTTGGAGACCGGCCTCTTCCCTTTCAAACTGAGGAAAACCAGAGGCTCGTTCACATGTTCCATATGCCCCGAGAAGTCAAACAATTTGGACGATTTAAAAACACATATACTTGATCACACCAAAACCAACATACATTTGGCATTCAAAAAGATGATGTTCTCAAATTCGCACAGATTCTTCAAGTTCGGTACTAATTTGAGATGCAAAATCTGTACAACGGACATTTCCAACTACGACGAGTTGAAACAGCACCTAGAACATTGCACTACAATGAAATATCGTGCTCGTAAATGGAACAACCTACCGTTTAAACTCGAAAAAGATCAGCTGGACTGTCCCGTTTGCAAGAagacatttttgaattttgtcaaTTTAAATACGCACATGAATGTGCATTATCCAAATTATATTTGTGAGAGCTGTGGGAAAGCGTTTGCATCGAAAGCCCGGCTCAAAGGTCATGTGCGGACCCACGAAGTAGGCACGTTCACCTGTAAGTATTGCCCCGCCGTGTTCGACCGTGTCACCAAGCGAGAGAATCACGTCTCAAAAGAACACAAATCTGGTGTAAGATACGCTTGCAAACGATGCAATGTATCTTTGACATCGTTCTATGCAAGACAGAAGCATTTAGCCGAGGTGCACAATGAGGAGTTGAAACGATACAAATGCAAGGCGTGCCCTCAGTCCTATATCACTCCAGGCCATTTGTCGAGCCACGTACGTAGAGACCATTTGAACGAACGCAACCATAAGTGTGATAAATGTGATTTGGCTTTTTATACGAAGAACTCTTTGAAGATGCACATGATCAAACACGACGGTGAAAGGATACACACGTGCCATATATGCCAGAAGTCGTATCAGCGCAAGAAGACTTTAAGGGAACATTTAAGGatacataataatgataaaaggtTTATTTGTCCGGTTTGCGGGCGTGCTTTCACACAAAAGTGTACGTTAAAGGGTCATTTAAAGGTGCATGAGAGGAAATTCGATGTGGAAGACAGAGCGAGTTAG
Protein Sequence: MDTEIMVEMLPQLGVCNLCLNEGPVKSMLIGYKHNGVLETYNDMLMKCFSIDLSLLHLGDVKRVICERCIAQLRDSVLFKKQVEASLRSLEANVKLNKHEKEIVDDMKDEPTAVTLFNDDFPGDDGDGDVHKHEKEIVDDMKDEPTAVTLFNDDFPGDDGDGEHVILADIKKEPTECRRKGRSKPLSKKLKVLNKVVDIKETEVMLETGLFPFKLRKTRGSFTCSICPEKSNNLDDLKTHILDHTKTNIHLAFKKMMFSNSHRFFKFGTNLRCKICTTDISNYDELKQHLEHCTTMKYRARKWNNLPFKLEKDQLDCPVCKKTFLNFVNLNTHMNVHYPNYICESCGKAFASKARLKGHVRTHEVGTFTCKYCPAVFDRVTKRENHVSKEHKSGVRYACKRCNVSLTSFYARQKHLAEVHNEELKRYKCKACPQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNSLKMHMIKHDGERIHTCHICQKSYQRKKTLREHLRIHNNDKRFICPVCGRAFTQKCTLKGHLKVHERKFDVEDRAS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -