Basic Information

Insect: Thaumetopoea pityocampa
Gene Symbol: -
Assembly: GCA_017165845.1
Location: WUAW01028418.1:1075-21842[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5 1.4e+02 3.9 2.4 1 23 20 44 20 44 0.90

2 14 0.00059 0.054 14.6 3.6 3 23 52 74 46 74 0.96

3 14 0.016 1.4 10.2 0.2 1 23 80 102 80 102 0.93

4 14 0.00077 0.072 14.3 3.3 1 23 108 130 108 130 0.98

5 14 0.61 57 5.1 0.0 2 20 141 159 141 161 0.89

6 14 0.12 11 7.3 0.2 1 23 240 262 240 262 0.96

7 14 0.74 68 4.9 7.2 1 23 269 291 269 291 0.95

8 14 0.00049 0.046 14.9 1.8 1 23 330 353 330 353 0.95

9 14 0.00012 0.011 16.8 0.7 1 23 360 383 360 383 0.98

10 14 0.001 0.095 13.9 0.2 2 23 405 427 404 427 0.96

11 14 2.3e-05 0.0021 19.1 0.1 2 21 455 474 454 475 0.94

12 14 0.001 0.095 13.9 1.9 1 23 482 504 482 504 0.97

13 14 4.3e-05 0.004 18.2 0.1 1 23 510 532 510 532 0.97

14 14 0.00021 0.019 16.0 0.7 3 23 540 561 538 561 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5	1.4e+02	3.9	2.4	1	23	20	44	20	44	0.90
2	14	0.00059	0.054	14.6	3.6	3	23	52	74	46	74	0.96
3	14	0.016	1.4	10.2	0.2	1	23	80	102	80	102	0.93
4	14	0.00077	0.072	14.3	3.3	1	23	108	130	108	130	0.98
5	14	0.61	57	5.1	0.0	2	20	141	159	141	161	0.89
6	14	0.12	11	7.3	0.2	1	23	240	262	240	262	0.96
7	14	0.74	68	4.9	7.2	1	23	269	291	269	291	0.95
8	14	0.00049	0.046	14.9	1.8	1	23	330	353	330	353	0.95
9	14	0.00012	0.011	16.8	0.7	1	23	360	383	360	383	0.98
10	14	0.001	0.095	13.9	0.2	2	23	405	427	404	427	0.96
11	14	2.3e-05	0.0021	19.1	0.1	2	21	455	474	454	475	0.94
12	14	0.001	0.095	13.9	1.9	1	23	482	504	482	504	0.97
13	14	4.3e-05	0.004	18.2	0.1	1	23	510	532	510	532	0.97
14	14	0.00021	0.019	16.0	0.7	3	23	540	561	538	561	0.95

Sequence Information

Coding Sequence: ATGCTTCTCGCTAGGCAGTTCCACGACACCCCAAACTCGTTAACAGCAGATGGCCGCTACAGCTGCACTAAATGTTCCAACGTGACCTTCACCACGGAGACAGCTTTGTTTGACCACGTGCACTTTCAACACCTAAAGCATCGCCGGTGGCACTGTCCCGTACGAGGATGCGGAAAGACTTTTTATCTCAGGGCGACTCTAACTAAACACAGCCGCACGCACACGGACACGCGGCGCTACGCATGCGACACCTGCGGCAAGCGGTTCCTCGACAAGCAGACCTTGGATGAGCACGGCGTCACGCACCTGCAGATCAAGCCGTTCCAATGTCACATCTGCTTGAAGCAGCTCACGCGTCGTTCCCGACTGCGGATGCACCTGCGGGCGCACGAAGAGGAGCTATCGCCGGCACTAGTGCGCGTTTGTGCCGTCTGCGCGCGCGCATTTCGCGATCAGAATGATGCACAGGAACACGCGTTGAAGTCTGCGGAATGTATAGAAGCATTCGCCAGCGAGTTGAAGGAGGAGACAGAGGAGGTGACCGTGCAACTGTCGCCCACTAGTGGGCTGGTCAGGCACGCCGTGCGGTCTGTTGAGTCACCTAAACTGTCAAAGGCCGTGGCGCGTCAGGTGTCCAGTCCTAGAGCTGAACCTTTGCTGTCCACCCTGTGCGACGAGGCGCGCGCCCTCATCAGAATAGTGGAGATCGAGAAGGCGTTCCGTTGCGAGTACTGTGAAGACGTGTTTTATTTGGAGAACGGTCTGAACACGCACCGCGTCATACACAAGAATGTGAAGAATCCCTTCACCTGTCACATATGCAAAGTCAGCTTCGCCACATACTCCAGATGTACAACTCACAAAACCACACACGGCTTCTACAAACGTTCTCTGGCCGAAGCCAAGAAGCAGCCGTCCACGGAGAACGAAGCAGGACCCTCGGCCACCGGTATCTTGGGTTATGGAGATTTTCCCGTGGTGAAACACTTCCTGTGCGAGGACTGCGGTCGCTCATACCTTCACTGGACCTACTTACAAGTACATCGGCGCATGAAACACGCCAACGAGAACTTTCTGTACAAATGCAATCAGTGCGAAGTGACGTTCCCTAACAGTTGGAGTCTGGCGTACCATCGTAAGAAACTTCACGGCAAAAGTGGAGCCGACGAGCCAGGCGCAACATCCAAAATACCTATAGAGAATTACAGGATACCGTGCCGCGACTGCGATGAAGTGTTGCCGAATAAGACAGCTTTGTACAGACACCGGAAGAAGGAACATAGTGATATGTCTCTATGTATGAACAGTTTGGAAAGTGATGCGAGCGGTATAAGAAATAATTCAAGCGATAACGAAGGTCTGACGTGTCCAACGTGCAGTAAAACTTTCTCGAGCCGCGCGGATCTGTCCGCGCACGTGCGGTCGGCGTGCACGCGGCGCGCCCACGAGTGCGGCGTGTGCGGGCATTCGTTCCGCACGCTGTCGATGCGGGACGAGCACTTGCGCGTGCACACGGGCGAGCGGCCGTTCCCCTGTGACGTATGCGGAGTCGCGTTCCGACGttcgACGGCGATGCGCAACCACCGCCTGATCCATACAGGCGTGCGTGCGTGGGCGTGCGCGCGCTGCCCCAAGCGCTTCCGCATCCGCTCTGAGCTGAAGACCCATCTGCGGCTCAAGCACCCGGCCACGCTCACCGTCATACAGGTAATGGCCTTCTAA
Protein Sequence: MLLARQFHDTPNSLTADGRYSCTKCSNVTFTTETALFDHVHFQHLKHRRWHCPVRGCGKTFYLRATLTKHSRTHTDTRRYACDTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELSPALVRVCAVCARAFRDQNDAQEHALKSAECIEAFASELKEETEEVTVQLSPTSGLVRHAVRSVESPKLSKAVARQVSSPRAEPLLSTLCDEARALIRIVEIEKAFRCEYCEDVFYLENGLNTHRVIHKNVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLAEAKKQPSTENEAGPSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCEVTFPNSWSLAYHRKKLHGKSGADEPGATSKIPIENYRIPCRDCDEVLPNKTALYRHRKKEHSDMSLCMNSLESDASGIRNNSSDNEGLTCPTCSKTFSSRADLSAHVRSACTRRAHECGVCGHSFRTLSMRDEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACARCPKRFRIRSELKTHLRLKHPATLTVIQVMAF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -