Tpit002920.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01002367.1:19844-22791[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.1 1.9e+02 3.5 2.6 3 23 41 62 39 62 0.91 2 18 0.16 14 7.0 0.0 2 23 88 110 87 110 0.93 3 18 1 93 4.5 1.9 2 23 133 154 132 154 0.94 4 18 0.024 2.3 9.5 0.7 1 23 158 180 158 180 0.96 5 18 1.8e-05 0.0016 19.4 3.9 1 23 185 208 185 208 0.98 6 18 0.019 1.8 9.9 0.5 2 23 216 238 215 238 0.94 7 18 0.0001 0.0094 17.0 2.0 1 23 245 268 245 268 0.97 8 18 0.0001 0.0093 17.1 3.7 1 23 274 296 274 296 0.98 9 18 0.00081 0.075 14.2 3.0 3 23 352 373 350 373 0.90 10 18 0.0012 0.11 13.7 0.8 2 23 397 419 396 419 0.96 11 18 0.029 2.6 9.3 0.8 2 23 441 462 440 462 0.96 12 18 0.05 4.7 8.6 1.6 1 23 466 488 466 488 0.97 13 18 0.11 10 7.5 2.0 1 23 493 516 493 516 0.82 14 18 0.12 11 7.4 1.9 2 23 524 546 523 546 0.91 15 18 6.7e-05 0.0063 17.6 2.1 2 23 554 576 553 576 0.96 16 18 0.0086 0.8 11.0 3.4 1 23 582 604 582 604 0.97 17 18 5.7e-05 0.0052 17.8 3.4 3 23 612 632 610 632 0.98 18 18 2.2e-05 0.002 19.1 0.2 1 23 638 661 638 661 0.92
Sequence Information
- Coding Sequence
- ATGAAAGCTAAATCGCTCAAGAATTCAACAGACGTATTAAAAAACAAGGGGAACTTGAAGAATATACTTCTCTATTCCAACGCTAATCCGATAAGGAGCAAAGATAGCAAAGGATATGGCTGCTCATTCTGTGTCAAACATTGCGAAGAGCCGAAAGCACTAAAGAAACATTTCTTAGAGGAGCACAACAACGAtaagtttataaaatacatgTCGTTGAGATTATTCGAACATGTCATCAAACTCGATATAACTGATCTAAATTGCGCTCTCTGTGATAAAAACATAGATAAACTAGACGAATTAGTAATACATCTTAGAGATGAACATAAGAAAGAGATGTATACAGATATTAAAAGCCTTATACTACCGTTCAAATTTGACACGCCCGAGCTGAAATGTGTGATGTGTTCAACTGTACACGGAACCTTCAAATTGCTCCAGCAACACATGAACTCACACTTTAGGAACTATCTTTGCGAAATCTGCGATGCTGGCTTCGTAAATGAGAGACACAAATTGAGTCATGTGAAACGTCACGACAATGGCGAATATAAATGCACGGAATGTGACAAAACATTTATGAACAATTTCAAACTGCGCGAGCATAAAAGGAGAACCCATCAGGGTTTCGGAAAGAGAAACAAATGCAAGTATTGCCCCGAAAGATTTGTCGATTACTGGAAGAAAATGGATCATATGGTAAAAGAGCATGGCATGACACCGGTAGTCTTTAAATGTTCCGCTTGCGAGCGAACATTCAATAACCAGAGGGCTTTATCGCGACACACGAAGAAAGATCATTTAATGGAGCGAAGACACAAATGCACTGAATGCGACATGAGATTCTTCGGCAAGAGTAGTTTAGTGAAACACATGACAAAACATACTGgtAACCTACGAAACTCTgcgcttagtgaagaggaaacaACAATTGAAGAACAAATAACAACACCAAATGAGCAAAAAAAGAAAGGAACAGACAATTTAAGAACAATACTGTTGTACTCGAACGCGAATTTAATAAGGAACAAAGATAGCGACGGTTACGGGTGTAATTTCTGTTCAAAACGATTTAAACATCCGAAAAATTTGAAGTCGCATTCCCTGGAagagcataataatataaattcgttGAAAATGCCAAAAccatttcaatatttaataaaagttgacATAACAGATTTGCAATGTAAAATTTGCGCGAAGACATACATGAGACTGGACGAGTTCTCTCAACATCTCAAACGTGATCATGACAAAAAAATAGGAACAGAATTGAACGAAATAATACCGTTTAGATTCGATACGGAGGAACTCCGTTGTGCTGTTTGTGGCACAGAGTATTCAACGTTCAAAATACTCCAGGAACACATGCATATGCACTTCAGGAATTACATATGTGACTTATGTAATGCTGGCTTTGTAACTAAACGACTTCTTGTTTGCCACAAAAGAAGACATGCTAAAGGAGAGTTTAAATGCGGCCATTGTGAGAAAACTTTCGTTGGAGACCAGAAAAGACGAGACCACGAACAACGGATTCATCTTGGATTAAAAAAACGTAACAAATGTAAACTGTGCGATGAAAAATTCGACGATTATTGGACTAAAATGCACCATATGGTGGAGAAACACGGAGCGCCACCCATCGCCTTGAAATGTACGGCTTGCGAACGGACCTTCACAAACAGAAGGTCTTTAACTCGCCACGTGAAGAAAGACCACTTGATGGAGAGAGAACACGTGTGTAGCCTATGCGATATGCAGTTCTTTCTGAAACATTATTTAGATGAACACATGAGGGTGCACACTGGTGTTAAGAAATTCGGTTGTCACGTTTGCACGAAGCGTTATGCGACTAAAAAGTCGTTGCAACAGCATTTACGGTCGCATGCGGACGATAGGCGGTACCGGTGTGATGTGTGCGGCTTGGCCTTCGTTCAGCGGAGCACGTTGAAGAGTCACGTGACGGCCAAACACGCAGATTAA
- Protein Sequence
- MKAKSLKNSTDVLKNKGNLKNILLYSNANPIRSKDSKGYGCSFCVKHCEEPKALKKHFLEEHNNDKFIKYMSLRLFEHVIKLDITDLNCALCDKNIDKLDELVIHLRDEHKKEMYTDIKSLILPFKFDTPELKCVMCSTVHGTFKLLQQHMNSHFRNYLCEICDAGFVNERHKLSHVKRHDNGEYKCTECDKTFMNNFKLREHKRRTHQGFGKRNKCKYCPERFVDYWKKMDHMVKEHGMTPVVFKCSACERTFNNQRALSRHTKKDHLMERRHKCTECDMRFFGKSSLVKHMTKHTGNLRNSALSEEETTIEEQITTPNEQKKKGTDNLRTILLYSNANLIRNKDSDGYGCNFCSKRFKHPKNLKSHSLEEHNNINSLKMPKPFQYLIKVDITDLQCKICAKTYMRLDEFSQHLKRDHDKKIGTELNEIIPFRFDTEELRCAVCGTEYSTFKILQEHMHMHFRNYICDLCNAGFVTKRLLVCHKRRHAKGEFKCGHCEKTFVGDQKRRDHEQRIHLGLKKRNKCKLCDEKFDDYWTKMHHMVEKHGAPPIALKCTACERTFTNRRSLTRHVKKDHLMEREHVCSLCDMQFFLKHYLDEHMRVHTGVKKFGCHVCTKRYATKKSLQQHLRSHADDRRYRCDVCGLAFVQRSTLKSHVTAKHAD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -