Tpit009985.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01009934.1:22102-28668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.09 8.3 7.8 0.0 2 23 12 33 12 33 0.95 2 18 0.015 1.4 10.2 0.6 2 23 56 77 55 77 0.97 3 18 0.036 3.3 9.0 0.2 1 23 81 103 81 103 0.95 4 18 0.028 2.6 9.3 0.2 1 19 108 126 108 131 0.79 5 18 0.0053 0.49 11.6 2.5 1 23 137 160 137 160 0.97 6 18 0.0072 0.67 11.2 0.4 1 23 243 265 243 266 0.95 7 18 0.074 6.9 8.0 0.2 2 23 293 314 292 314 0.96 8 18 0.2 19 6.7 3.1 2 23 336 357 335 357 0.96 9 18 6.8e-06 0.00063 20.7 1.1 1 23 361 383 361 383 0.98 10 18 0.00058 0.054 14.7 0.4 2 23 500 522 499 522 0.95 11 18 0.0073 0.67 11.2 2.8 1 23 544 566 544 566 0.98 12 18 0.0006 0.056 14.6 1.2 2 23 571 592 570 592 0.94 13 18 0.013 1.2 10.5 2.6 1 23 600 623 600 623 0.97 14 18 0.00058 0.053 14.7 1.5 1 23 629 652 629 652 0.98 15 18 0.49 45 5.5 1.1 1 23 658 681 658 681 0.95 16 18 2.2e-05 0.002 19.1 1.0 1 23 687 709 687 709 0.98 17 18 7.1e-07 6.5e-05 23.8 1.4 1 23 715 737 715 737 0.99 18 18 0.00022 0.021 16.0 4.1 1 23 743 765 743 766 0.95
Sequence Information
- Coding Sequence
- ATGACTCTTATCAACGTCGACGTCACAGAAGCGGTCTGCTATTACTGCTCTGCACCGTTCGTAGACGTGTCGCAAATGCGAGAACACGTCATCCAACATGGCTTCGACCTCGACCTAAAGCACCCTGACGGCATTTTACCATTCTCATTAGACAAACAGTCCTGGAAATGCGTGCTCTGTCAGGAGAAGTTCAACAATTTTCTAAAGCTTTATGAACACATGAACGTGCATTACCAACATTACATTTGCGCCACTTGCGGCAAGGGCTATATGACGGCACCAAGGTTTAGGAAGCACTCGGAAGTTCACGTGTCTGGTTCATTTCCTTGTAACGATTGCGGCAGAATATTTACCATGCGAGCGGCTAGAGATTCTCATAAAGCGTTCGCTCATTCCAAAGGGCCCAGATACGAATGTCCACATTGCAGTATGCGTTTCGAAGGGTACTACCATAGGATGGAGCACATGAAGATTGCTCACAGTGAGAAGGAGGTGTCATACAATTGTTCTCACTgtTCCGCTAACGCGGACGGGAATATTGAAATTAGGCGAGTTAGAAAGTTGAAGGACAACGTTAGCGCACGCCAAATGCGCAGGCGGCGGCGGGCTAACAACCAGCTACCCGAAGAATCCGAGAAACGTATCTCCAAAACGATGATGAGACGTAACGCGATGACCATTCTCGAATGTTCCACCGCCTGGGCTTTCAGATGGTTTCATAGCGCGTTCTACTGCTCTTACTGCGAAATTAAATTCGTTGACGTACCACCTTTACGAGAACACGTCAAAATACACCATTTAAACGAATTGCCAACTAAAAAAATCTTCGCGAAACTGACCGAGAATAATATGGTTAAAGTTGACATAGCTGAGCTTAGCTGTAGACTTTGTAACAGATTTTTAAACGGAATAGATTCGCTGAAAGATCATATGCTCATACACGGGAAGATCCTTAACGTAAATTATAGTGACGGAGTTTTACCATTCAAATTGGATGACGACTGTATCTGTCAATTGTGTTTCAATCAGTTCTCGAGCTTTGCCAAAATGAACGAACATATGAATACGCATTATCAGAATTACATCTGTGACACTTGTGGCAAGGCTTTTGTTTCAAAATCGCGGTTCAGAAAACACGTGCAGTCTCATGAGAAAGGCAGCTTCGCTTGTGGTTTGTGTGACGAAGTTCTGGAGACGAGAGCCTCACGAATGTGCCATAGGATGCGAATACACAAGAAAGgcTCCGTCGAATTGAAAGTAAAATGGAAGCCGAAGCGCAAGTTTAACGATCACAGGGACAATGCCGCGATCATTCTAGAATGTTCGAACGCTTGTCCTTTCCGCTGGAAGAGGGGGGCGTTCACTTGTGCTTTCTGCGCTCAGTCCTTTGGAGATTTCTTTGGCGTTAGAGGCCATTTTCTAGATCATCCCAATAAAATCGAAGCAATGCGCTTATCGCGAACTTTCGCTAATATCAAAGTTGAAGTGACAGATCTAAAGTGTGAAATTTGCTTAAAATGTTTCGATAATTTAGAGAGTCTCGCCGATCATTTGATTTCGGTTCACAGGAAACCCATGAACAAAGATTACGGGCTGGGTGTCACACCTTTTTATTTGACCGGCAATGACTATGTTTGCACGCACTGCAATGCGACTTtcgaattatttacaaaattgaacACACACCTGAACCAGCACTATCCTAACTGTATTTGTCCCTCGTGCGGCAAAGCGTTCTCCTCTATACACCGATTAAAAGCCCATTTGGTCATTCACGAATCAAGCGACATTGTAAAGCATAAATGTACCAAGTGTGATTTAGTCTTCCAATCGAAAGTGTTGAAAAATAATCACGTGAAACGCGCCCATGGCCCATTATTAAGATACAGATGTCCTTACTGCAAAGAGTTCTTCAAAAGCTATGCGGACAGAGGTAAACATTTGAAGACGGTTCACGATAGAAAGATAGAATACCCATGTAACTCGTGCTCGGCCGTTTTCGCCATGTGCAATCAACGGACCAAGCACGTGAATCAGGTCCACAGGGGAGACAAACCGTTCTCGTGCGATTTTTGCTCTTATAAGTTTGTAACCGCTGCGCAACTTCGCAACCACATGATCAAACACGGTGGCGAAAGGAAATACCAATGTCAGGTGTGTAAAAAGGCGTACGCCAGAAAGAAAACGTTAAAGGAACACATGAGGATCCATAACAACGACAAGCGTTTTATCTGTGAGTACTGTAATAACGCGTACGTACAAAAGTGTAGTTTACAAAGTCATATAAGGACGCACCACCCATCTGCGGATTCTCCGAAGAAGATGCGCTCCTCGAACGCGTATTGA
- Protein Sequence
- MTLINVDVTEAVCYYCSAPFVDVSQMREHVIQHGFDLDLKHPDGILPFSLDKQSWKCVLCQEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRFRKHSEVHVSGSFPCNDCGRIFTMRAARDSHKAFAHSKGPRYECPHCSMRFEGYYHRMEHMKIAHSEKEVSYNCSHCSANADGNIEIRRVRKLKDNVSARQMRRRRRANNQLPEESEKRISKTMMRRNAMTILECSTAWAFRWFHSAFYCSYCEIKFVDVPPLREHVKIHHLNELPTKKIFAKLTENNMVKVDIAELSCRLCNRFLNGIDSLKDHMLIHGKILNVNYSDGVLPFKLDDDCICQLCFNQFSSFAKMNEHMNTHYQNYICDTCGKAFVSKSRFRKHVQSHEKGSFACGLCDEVLETRASRMCHRMRIHKKGSVELKVKWKPKRKFNDHRDNAAIILECSNACPFRWKRGAFTCAFCAQSFGDFFGVRGHFLDHPNKIEAMRLSRTFANIKVEVTDLKCEICLKCFDNLESLADHLISVHRKPMNKDYGLGVTPFYLTGNDYVCTHCNATFELFTKLNTHLNQHYPNCICPSCGKAFSSIHRLKAHLVIHESSDIVKHKCTKCDLVFQSKVLKNNHVKRAHGPLLRYRCPYCKEFFKSYADRGKHLKTVHDRKIEYPCNSCSAVFAMCNQRTKHVNQVHRGDKPFSCDFCSYKFVTAAQLRNHMIKHGGERKYQCQVCKKAYARKKTLKEHMRIHNNDKRFICEYCNNAYVQKCSLQSHIRTHHPSADSPKKMRSSNAY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -