Tpit012424.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01012875.1:37611-39645[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5e-06 0.00033 21.6 1.2 1 23 47 70 47 70 0.95 2 11 1.2e-06 0.00011 23.1 4.9 1 23 76 98 76 98 0.98 3 11 0.00031 0.028 15.5 2.2 1 21 104 124 104 126 0.94 4 11 9.5e-06 0.00088 20.3 0.2 1 23 131 153 131 153 0.97 5 11 1.4 1.3e+02 4.1 1.4 1 23 214 235 214 235 0.86 6 11 0.0005 0.047 14.9 0.4 2 23 341 363 341 363 0.96 7 11 8.6e-06 0.00079 20.4 0.6 1 23 369 391 369 391 0.94 8 11 2.7e-05 0.0025 18.9 0.4 1 23 397 419 397 419 0.97 9 11 0.00011 0.01 16.9 3.1 2 23 426 447 425 447 0.97 10 11 1.9e-05 0.0018 19.3 1.0 3 23 455 475 453 475 0.96 11 11 6.5e-05 0.0061 17.6 1.6 1 23 480 503 480 503 0.97
Sequence Information
- Coding Sequence
- ATGGAAAACATCGAGGAACCCTCCGTGATGACTAAAGATGGAGATGGAAAGGTGTACCGAAAATGTGCATTGTGCGACAAGAACGTAACGGTACACACCTGGAAACGACACTTACGTTGCCATATGGGGGAGAGGCGGTACAGCTGTCATACCTGCGGAGTCAGTTTCAACGACAACGGCAATCTCTCGCGACACACAAAAGCTTTGCACGACCAATATCGGCCTTATTCTTGTTCTATATGCCACAAAACCTTCTCCAGGAACGGACACCTAACAGATCACGTGAAATCCCACTCGCATCGGCGTGATTTTATTTGCGACCTTTGCGGCAAAGCGTACAAGAACAGTGCTACGTTGAGAATGCATAGAAAATGCCATGAAAactataaattccaatgtatggAATGTGGTGCGCAGTTCAAGAGGGCGAGCGAGTTGAAATCCCACGTAACTGTACACACCGGAGAGAAGGCGCACTCGTTCGAGGATATAACTGGCATTGTTGTCCCGCTGGATCTCCCGCACTGCGAAGAGTCTATCAGCTCAGTAGAACCCACTAGAAAATGCGAGTTCTGCAATATTGAATATGAGGAGAACGCTTACAAGGAACACCTAGTCACGGCTCACGCCGATATGCTGTTTCATTGTGAGGACTGCGACCAATTCATTGTTAGAAAAGAGTTTATAATGCACATGTCCCTTCACGCAGTCCGTTACAACAACGACAAAAGCGACTCCAAGAAGAACAAAAAGAATAAGAAATCAGATGAAATTAGCACTAATGTAGATAATCTTCAAGATCCGAAGCCTCAGGAGCACCAAGTGAATGAGTTCTCTGATCATAGTGATACGGAATCTGGTTTCGGACCACTGCCGGAATCAGTTTTCGAAGCGATAGAAGACTCTCAAGACAGCCAACCCGCTGACGAAGAGTCTGCCATTCTAGAAACAGGTGATACTAATTGTAAGCCAGTCGAGAACACAGAACAaccaaaaattaagaaatacaaAAAGACAAGAACGTGTCCTATCTGTTCTAAGGTGTACACAGCATCTTCTAGCTACTTCTATCATATCAAATATAGCCATAACAATAGTAAGGATCACGAATGCGATATTTGCGGCAAGAAATTTGGCAGCAAAGTCAATTTATTACGACATGGGCTCTTACATACGGAAGGGTGTCAGTTTGAGTGTAAAGTATGTAAGAAGCCGTTTAAGTCTAAAGCAGGCTTGTACATACACGAGCAGATACACAACGGGGACAAGAGGTGGTCCTGTTCGCAGTGCCACAAGTCTTTTAGATGGAGACCAGAATTACAAAGGCATATGAAACGACATTCGGGTGAAAGGGGGCACCTGTGTTCGATATGCGGCCGTGGTTTTAGTATAAGGGGCGATTTGTTGAGGCATACGCGTACGCACACCGCGGGCAACTTCACATGTGATAAGTGCGGGCTGAAGTTCGCACAGATGAGGTATCTCAAAGTGCACTTAAACAAGAAGCATTCGGAAGAGGTGAAAGAGTCTCATTGCGTATGA
- Protein Sequence
- MENIEEPSVMTKDGDGKVYRKCALCDKNVTVHTWKRHLRCHMGERRYSCHTCGVSFNDNGNLSRHTKALHDQYRPYSCSICHKTFSRNGHLTDHVKSHSHRRDFICDLCGKAYKNSATLRMHRKCHENYKFQCMECGAQFKRASELKSHVTVHTGEKAHSFEDITGIVVPLDLPHCEESISSVEPTRKCEFCNIEYEENAYKEHLVTAHADMLFHCEDCDQFIVRKEFIMHMSLHAVRYNNDKSDSKKNKKNKKSDEISTNVDNLQDPKPQEHQVNEFSDHSDTESGFGPLPESVFEAIEDSQDSQPADEESAILETGDTNCKPVENTEQPKIKKYKKTRTCPICSKVYTASSSYFYHIKYSHNNSKDHECDICGKKFGSKVNLLRHGLLHTEGCQFECKVCKKPFKSKAGLYIHEQIHNGDKRWSCSQCHKSFRWRPELQRHMKRHSGERGHLCSICGRGFSIRGDLLRHTRTHTAGNFTCDKCGLKFAQMRYLKVHLNKKHSEEVKESHCV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -