Tpit008425.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- Znf131
- Assembly
- GCA_017165845.1
- Location
- WUAW01008146.1:612-6269[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0016 0.15 13.3 0.8 2 23 252 273 251 273 0.96 2 13 0.32 30 6.0 0.1 6 23 285 303 285 303 0.95 3 13 0.012 1.1 10.6 0.1 3 23 315 335 314 335 0.96 4 13 0.0019 0.18 13.0 0.1 2 23 357 378 357 378 0.96 5 13 9.3e-06 0.00086 20.3 2.8 1 23 383 406 383 406 0.97 6 13 0.22 20 6.6 0.2 1 22 412 433 412 434 0.77 7 13 0.019 1.7 9.9 3.6 1 23 560 582 560 582 0.97 8 13 0.00012 0.011 16.8 2.9 2 23 589 611 588 611 0.92 9 13 4.1e-07 3.8e-05 24.6 0.9 1 23 617 639 617 639 0.98 10 13 1.5e-06 0.00013 22.8 3.7 1 23 645 667 645 667 0.98 11 13 0.00018 0.016 16.3 0.9 1 23 673 695 673 695 0.97 12 13 1e-05 0.00097 20.1 3.5 1 23 701 723 701 723 0.97 13 13 1.6e-05 0.0014 19.6 1.4 1 23 729 752 729 752 0.96
Sequence Information
- Coding Sequence
- atgaataatgaaagtgaacaatgttttttattaacaacatcATCAAACCAACCGTCGACGGCGGTACACAAGGTTTTATCAGAAACACCGGAGACCACGCAACTTAATCTTGAAAatgTAGAAAACTTCACAAACGTATGCCGCATATGTGCCACCATAACAGAATTTATTATGCCCATATTTGCTGAAGAGGGCTTGCAGAATAATTTAGCtgacaaaataaacaaacaccttCCTATACAGGTTTTTGAGCAGGATATGCTGCCGCTCGTAGTGTGCTACCAGTGCGCAAGCACGCTGCTGGCATGGCACGAGCTAGTGGCCTGCTGTCAGCAGGCCGACATTGCGCTACGCGCTTGCCTGCCCCGCGTCACACGGCCGCGTGACCCACAGGAAGCAGACAGCGCGACGACGCACCAGAAGTCAAACACGGAGGACGAGATACAAAACAAGTCCCAAACCTTTTGCAAACATGTTAAAGACGTTGTCGATGATTACTTACGCAAACTAAATATAACAGATGATAACACAGGGCTGGAGTTTGTCTGCCAGACATGTCCAGAGAAGCCTGCCTCCATGACAGTTGAAACTTTAGCAAAACACTTGGAATATGACCACTCATCGGAACTAAAATACTTACAAGATATCGAAAAGTTTGTCAGTGAGAATATCACGTTCGAAGAAGTATTGGATATTGAGTATGACAAAGATAGTGCACCGGATACTTATGAAACTCCGAATTTGCCAAGTCTGTACTGTCCTTTTTGTAATAACGTTTTTTCGTCATCAACCAGACTGATCTACCATTTGAATAAACACATGGAAATGTCGATTAATGATGGCATGATCTGCTGTGATGAGCGTTACAAGGACAAAAACACTTACGTGAAGCACTTACAGGCCGTCCACGTCAACAAAATTACCGATCACTCCTCCAAGATATGTAGATCTTGCGGCTTTACCACAGACGATGCTGAAGAGTTGCAAACCCATATTAAAGAACATAATGAAACTAAAatcaaaaagaagaaaaaccaAAATCCGAATCACGTTCGTAATATACCCGCCGTGTGCCCGGAGTGCGACAAAACGTTTGCCAACGTATACATCATGTTCGAGCACATGAACTCGCACAGCGGGGTCCGCCATAAGTGTGACAGATGCGATAAGACGTACGGCAACCGCGGGAACCTGAGACAACATCAGAGGATAACACACGAGGGAGtgcttaagtttatttgctcaGTATGTGGCGAGGCGTTCCCTACAGGGTCACAACGGGATTTCCACACACGGATACACACAGGGGGAGTAACGAAGCTTGTTTGTTGCAGGGACGCCCACAGTCACGCACAGGACTTGGATTTAGACTTTCACTGTTACGATTTCGATTCGGACCAATCAGATAATGAACCGTTGTCGAAGATTGCGGGTAGGAAACGCAACAATCTTTATAGCAACTTCTACAAAGCACTCGCCAATTTTAGGGATCATTACTTTGATAAGCATGAAGACAATTACTCTGATCTCAGTGAGTGTAGCACTTCCGCTGATGAAGATAACACTGTGGATAATTACGACGACTTAACACTCACCAATATGAGAAGAGGGAAACTGGACCTCAGCATAACACAAGAGCTGGACCAAATGCAAACGAGAATAAACGGGAAAGTCTATTACACTTGTAAAATATGCGGAAAGAATTTAAGCTCGAGACACACGTACGTGTTCCATAGGCGGATACACACCGGCGAGAAGCCGTGCGTTTGTCACATATGCGGCAAACAGTTTCGTGTATCGAACGGCTTACAGCGCCACCTGACGGAGACTCACGAGCGGATCAAACGGTACAGTTGCAAACTGTGTCCGAAGACATTCGCGAATACACAGAACCTGAGGCAGCACATACGGATACACACGGGGGAGCGGCCCTTTGTGTGCGCGCACTGCGGGAAGCGTTTCAGGCAGCGCGGCTCTCTACACGTACACATCAAAACGCACACGGAGCAGTTCCCGCACCAGTGCGGAGACTGCGGCGAGAAGTTCAGACTGCGCGCCGGCTTGGTCCGACACAAGCTGAAGCACACCGGCGAAAGAGCGCACCGCTGCTCCGCGTGCGGCAAAACGTTCCGACAGAGATACGAGCTGAACAACCACCAGACGATGCATTCGGACAGTAAACCGTTCGCCTGCGCCGTCTGCGGCGCCAGCTTCAAGCAACGGAGGACGCTGCGACACCACATTAAGAAAGTTCACGAAAACATTGGGGGTGCTGAAGGGAGCCGGCCCCTGGTGTGTCACCCTGGACCGTTTTAG
- Protein Sequence
- MNNESEQCFLLTTSSNQPSTAVHKVLSETPETTQLNLENVENFTNVCRICATITEFIMPIFAEEGLQNNLADKINKHLPIQVFEQDMLPLVVCYQCASTLLAWHELVACCQQADIALRACLPRVTRPRDPQEADSATTHQKSNTEDEIQNKSQTFCKHVKDVVDDYLRKLNITDDNTGLEFVCQTCPEKPASMTVETLAKHLEYDHSSELKYLQDIEKFVSENITFEEVLDIEYDKDSAPDTYETPNLPSLYCPFCNNVFSSSTRLIYHLNKHMEMSINDGMICCDERYKDKNTYVKHLQAVHVNKITDHSSKICRSCGFTTDDAEELQTHIKEHNETKIKKKKNQNPNHVRNIPAVCPECDKTFANVYIMFEHMNSHSGVRHKCDRCDKTYGNRGNLRQHQRITHEGVLKFICSVCGEAFPTGSQRDFHTRIHTGGVTKLVCCRDAHSHAQDLDLDFHCYDFDSDQSDNEPLSKIAGRKRNNLYSNFYKALANFRDHYFDKHEDNYSDLSECSTSADEDNTVDNYDDLTLTNMRRGKLDLSITQELDQMQTRINGKVYYTCKICGKNLSSRHTYVFHRRIHTGEKPCVCHICGKQFRVSNGLQRHLTETHERIKRYSCKLCPKTFANTQNLRQHIRIHTGERPFVCAHCGKRFRQRGSLHVHIKTHTEQFPHQCGDCGEKFRLRAGLVRHKLKHTGERAHRCSACGKTFRQRYELNNHQTMHSDSKPFACAVCGASFKQRRTLRHHIKKVHENIGGAEGSRPLVCHPGPF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -