Tpit002190.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01001797.1:31341-45775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0044 0.41 11.9 0.6 1 23 220 242 220 242 0.99 2 30 0.00056 0.052 14.7 0.5 3 20 279 296 279 298 0.95 3 30 0.00078 0.072 14.3 1.6 2 23 331 353 330 353 0.96 4 30 6.9e-05 0.0064 17.6 0.6 2 23 401 422 400 422 0.97 5 30 0.14 13 7.1 0.1 1 23 439 461 439 461 0.96 6 30 0.015 1.4 10.2 1.1 1 20 498 517 498 519 0.93 7 30 0.0025 0.23 12.7 4.3 2 23 557 579 557 579 0.97 8 30 0.038 3.6 8.9 0.5 1 23 629 652 629 652 0.95 9 30 0.0037 0.34 12.1 0.2 1 23 706 728 706 728 0.97 10 30 0.011 1.1 10.6 5.9 2 23 740 761 739 761 0.96 11 30 0.048 4.4 8.6 1.3 2 23 773 794 772 794 0.96 12 30 0.0033 0.31 12.3 0.6 1 23 804 826 804 826 0.98 13 30 0.0039 0.36 12.0 7.7 2 23 855 876 855 876 0.96 14 30 0.00025 0.023 15.8 3.8 1 23 887 909 887 909 0.98 15 30 6.2e-05 0.0057 17.7 2.4 1 23 917 939 917 939 0.97 16 30 0.0001 0.0092 17.1 0.2 2 23 959 981 958 981 0.97 17 30 2.3 2.1e+02 3.4 0.2 1 23 999 1021 999 1021 0.89 18 30 0.11 9.8 7.5 3.1 1 23 1028 1050 1028 1050 0.97 19 30 0.017 1.6 10.0 5.2 2 23 1061 1083 1060 1084 0.94 20 30 0.0018 0.17 13.1 0.2 2 23 1106 1127 1105 1127 0.95 21 30 7.6 7.1e+02 1.7 5.9 2 23 1170 1192 1169 1192 0.94 22 30 0.0053 0.49 11.6 0.2 2 23 1208 1229 1207 1229 0.95 23 30 3.7 3.4e+02 2.7 3.4 5 23 1239 1257 1236 1257 0.93 24 30 0.046 4.3 8.7 0.8 2 23 1268 1290 1267 1290 0.95 25 30 0.48 44 5.5 2.9 2 23 1307 1325 1307 1325 0.87 26 30 0.15 14 7.0 1.4 2 21 1329 1348 1328 1349 0.93 27 30 0.51 48 5.4 0.7 2 23 1397 1418 1396 1418 0.93 28 30 0.0031 0.29 12.4 0.6 2 23 1429 1451 1428 1451 0.96 29 30 4.5 4.2e+02 2.4 0.6 2 23 1467 1485 1467 1485 0.77 30 30 0.48 44 5.5 4.3 2 21 1489 1508 1488 1509 0.94
Sequence Information
- Coding Sequence
- ATGTCGTCATTTCTAATAGAACAGGCCACCTACAATAATGTTCTTCTTCTGCAAAGCATAGCGACTGCGCCGTTGGAGAAATTCCTTGAGTATTCGGTTCAATGGCCGCGCTGCGTCGTGAGCGCTTCGCGTCTGTGTAAGTACGCGGCACTAACACATACAAACGGCCTCTGGCCGTGGCTGTGCAAACATATATATGAAGGAGATGGCCTTCCCGACAAAGTGTGCACAGAATGTGTACAGAAGCTCAGCAGTgcatacatttttaaacaaCAGTGTGAGAGGTCAGATCAGGAGCTGCGACGGAATTATGTTCCACCACCAGgttTCAGCATCAGTCCTCCTCCGGCAAACAGACAGAGCAGTGATTCCGCATTCTCCAATCGCACTGACACCTCCAATGTGATAAAGCCTTCTCcctctgaaaataaaataattcccACCAGTATAAGGAGTAGAAAGAGGAGCATAGAGAGTGATGCCGCATCCCAGGACTCTGACTACAGACCAACGCCCTCGAAACGGGTCGAGGAGCTTCGCAAATTACAAAAGAGACCAAGACTACAGGAGTACAACTCTCATTTAGACTCGGATTATGAAGACAACAGTGTCTGTACTGCAGAAACCGATTCCGATGAGCCACTATCGAAGAACATATACAAGTGTGATCGTTGCCCCAAACAGTACATGTCAGTGAAGAGTCTCGCCATACATAAGAGGATTCATTCGAACTCTAAAAATGAGAGTCTAGGAGAGAATACTTTTGTAGAAATTCCGAAGAAAATTATGAACTCTAGCATCGAAGATGCTGCTGACGTGGAGGACAAGCTGGGCTGTGATAAATGCGGGAAGACGTTTAAATTGAAGATTATGTTGAAGCGTCACCAGGACGTCTGTTCTAAGACGCCATTGCAGCCTGGCTGCTCAACGCCACCGAAAGAATTGCTTGTTTCACTACAACCCATCGATGGTATGGACGACAGAAATATTTCCTGCCATATATGcacatcaaaatttaaaactattgaTAGTTTGAACAGACATTTGAAAATAGTTCATTCGGCTGCACCTATTAAGGAAAAGACTGAGAATGGAAAGGTGACGATGCCTTGTATATATTGTTTTGAGATATTTAGCGAATACTATCCTCATGTTGAACATCTGAGCATGTGTCCAAAGAAGGACGACACAACACCTCTACAGTGTCCTGTCTGTAAGAAGGTTGTTACACGGAGAAATAACTACAATATCCATTTGAAGTCGCACTATGTACGGAGCTCGTGCGGGCCGCCAGCGGATCCTGGCAAGCAGCTGTTTGACTGTCGCGTGTGCGTCGCGAAGCTCTCATCCCAGGAAGAGCTCATCAATCATCTGACATCACATGTTGAAGACATCGAGGCTACGGCCGACAATGAGTCCAGaGGGAGCACAATGGATGATTCGGCATCAGTTTTATCAGTTCCAAGCGGTTCTTTCAcattcacaaaaatatataaatgtattaaatgtgACAAAGAATTCAAATATAAGAAAGCTCTAGAAACACACGAGACAAAATGTGAAGCTATTAAAACTGAGGTGAAACAGGAACCGATGGACAGAACTGGCCTGCTGAGTGAGGCTCGTCGCCACTCCGAGTCAGAATCTAGTCAAGAAGGCGAGGACAACACTTGTGACATCTGCGAAAAGCAGTTCTCCTACAAAAGGCTACTGCTACATCACAAGAAAACGAAACACAACATGAGTTCTGGCCACAAGCGCGCGAAAATATTGCTTAAGGACTGCGACGTAAGGTGCTTAATATGCGACATTGAAATGAAAGTGAGCACTGTCAATGAACACAATCAGACTCACATATCGATGAATATGAAACCTCGTAATTTATACACGTGTATCGAATGTGGGGACCAGTTCAAGAGCTGCAGCGCCCTCGCTAATCACATAAAATTGATACACAGGCTAAAGCAACAGAAGCTGGTCACTAATATCGACCCGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCTCTGGACTGTATCCAGAGTCACAACGACTTTGGAGAGGTTCCGGGAAATCAGGATAGCAAAGCCACCGTTAACCTCAGCGGCTTTACCTGCCCTATATGTAGCAAGAAAATGCCCACGTTGATATCACTGAAGCGACATGTTAATTGGCATACTGCCGTTGGTAATACTTTGGAGAAGAAATTGGAGTGCTTCGTGTGCAAAgagtcaTTCCGATTCCAATGTCACTACAAGCTGCACATGCGCGAGCACTACAACGACACGAAGTTGGACCCGAAACACCTCACCTGTCCCATCTGCAGCCGGCGCAGCAAGCACCTGCGGGCCGCCAAGGCGCACATGAACTTCCACAAGCAGACGCGCTTTCAGAATAAGGACTATCAGTGCTCGATATGCGAGCGGGTGTTCCAGTACAGAAAGGTGTACCTTACGCATATGGCCATACACTACAAGAAGGGCGACACACAGAACACTGTAGTCGGTGACATTGTACCCAACACTCTGGATACGAAAGTCTTCGACGGAACCAATACCTGTCATCATTGTGGCAAAGTCTGCAGCTCTGAGAACTCCCTGAAGCACCATCTGATTTGGCACAACTCCAAAACGTTTCTGTACGGAGCGCGCCACGAGTGTAAGATATGTAAAGTCAAATTCACTAATAAAAGGAGACTGGAAACGCATATTAGGTCTCATTATGAAGACGACAATGGCCCCTTCAAATGTACCATCTGTGGTAAAGGGTTCACAGTGGAACATTACTTCCAGAAACATGTGAAAGGTCACAACTTTGACCACCAGTCACATCAGAAGAGGCTGGAAAAATTGCGGAAGAATAAAGTGAAATGCCCAATTTGCAATAAATACTATCCGGATCTCGTGAAACTTATCCGTCATTTGCGACGGACACATCCCGAGAGTAAGATGATTAAAGAGGACCCCGATGCACCCCCTCAAATTTACTACTCGTGCAAGCTATGTGCTAGAGTATTCCTAGATGAACGGAGATTACAATCCCATGAGGAAGCTCATCTAAGGAAGCCAGAGTTCTTCAAATGCAAGTTCTGTGGGAAGAACACTATATCCTTAAAGAATCACCGAGTGCATATAAAAGCAcatttaacacaaaaatattatgatgatcCGCTGAAGTGTCCGCACTGCGAGGAGACATTCATTAAGGGCTACGACCTGCATCACCACCTGCGGGATGTCCACCACATCAACGAAACGTGGATAGCTGAACGCACGGCGCAGACGCTCGACGGACCGCTGAAGGACTTGCAGTGCTCTATATGTTTGAAAGTCCTCGCGAGCAAAGGAAACTTTGAGAGGCACATCGACTACCACAACACGTTGCGATGCAACTACTGCTTTGACTATTTTAGCTCTCTCCGTTTCTTGGAAGGCCACTTGGCGTTTAGTTGCGACAAGAAGAAATTACTTGGTGATACAGAAGTGTATCCGAAAAAGGTGAAGTGTCACATTTGTTATAAAGCATTCCATCTGCAAGTGAAACTAGATTGCCACCTGCGCACTCAGCACGACATCATAGTGAATAGAGAAGCATCCATTGGCACAACTGAAATAGTCTGTGATTACTGCTTCAGAGTATTTGAGAATGAATATGCTCTGTCCACCCACAAAATTTATCACCGCACGGTCGGGTACTATGGGTgtatttattgcaataaaaagTTTAACACTATAACGGTTTATAGGAAACACAAGAATCACCACTTTTCCCAGTTGAATGTTGATAATCCTACGAAATGTGAACACTGCGAAGAGACATTTGTCGCATTCAGGGAGATGATATACCACATGCGTGATGTCCACGGGGATGACAAGGAGTGGATCGTGATGCCCAAAGAGTCTATCGAGGAAGAGTGTCCTATTTGTAAAAAGGTTTTCTTCAATTTGCACAAACACCTGACATATCATGAAGAAAACAAATGCAAGAAATGCGGTGAATATTTCTTCTCGAGGGCAGACTATGACAATCATTTGTGTGCCATCGAAAGTGACGATGAAATCCAAATTCTGTCCAACGGCCAAGCGCCCAAATATGAGGAGTGCCGCTTCTGCTTTAAACCCATAACGAAGAAGGATTCTAAACTTAAACACGACAAAATACACAGAGGGTCCGGTGCCATATCATGCAGATTCTGCTCACTTAAGTTCAAAACTATCGATGCGTTCAATATCCACGCATTCTCCCACCGAAGTAGAAAGTACAACAAGAAACCGATAAAATGTAGAAAATGTGGCGAGAAGTTCGTTAAATATGGACCATTCATAAAGCATATGAAACAAGTGCACAAATCCATTAAGAAGATTCACTACAGAGCTATCGTGAAGCCGGAGACGTGCGTCGTGTGCGGCGAGGACTTCCCCAACCTGCACAATCACTACCGGGCACACTTGTTGAACCAGTGCCAGCACTGCCGCAAATACTTTACCTCCTCGAAAGTGTTTGCAAACCATCAGTGCGACAAAGAAGACATTGACCCGACCAAAGTGTTCATTTGTGGCGAAAACCTTAAGGAGCTGATAAACTCTTACGTACCGAAAGATGAGAAGGATGACGAGAAATACTATGGACACAGCGATGAAGAGGAAACTGATTCGCAGCCAACCCTTGAAGATGAAGAGAGTCAGGATACTAAACCGAACTATGATGCATTTATGGCTGTAAAATCGCCAATTATTTCTGATGTTCTGTCACTTTATCGGACCGAAGAGAAAAATGATGATAAGATTAGCGTCGTCAACCTAACGGACGACGACTCCGTAGGCTTTGAGGATTCAGTTTCTGTTGTTGTAGTGATTGATGATTGA
- Protein Sequence
- MSSFLIEQATYNNVLLLQSIATAPLEKFLEYSVQWPRCVVSASRLCKYAALTHTNGLWPWLCKHIYEGDGLPDKVCTECVQKLSSAYIFKQQCERSDQELRRNYVPPPGFSISPPPANRQSSDSAFSNRTDTSNVIKPSPSENKIIPTSIRSRKRSIESDAASQDSDYRPTPSKRVEELRKLQKRPRLQEYNSHLDSDYEDNSVCTAETDSDEPLSKNIYKCDRCPKQYMSVKSLAIHKRIHSNSKNESLGENTFVEIPKKIMNSSIEDAADVEDKLGCDKCGKTFKLKIMLKRHQDVCSKTPLQPGCSTPPKELLVSLQPIDGMDDRNISCHICTSKFKTIDSLNRHLKIVHSAAPIKEKTENGKVTMPCIYCFEIFSEYYPHVEHLSMCPKKDDTTPLQCPVCKKVVTRRNNYNIHLKSHYVRSSCGPPADPGKQLFDCRVCVAKLSSQEELINHLTSHVEDIEATADNESRGSTMDDSASVLSVPSGSFTFTKIYKCIKCDKEFKYKKALETHETKCEAIKTEVKQEPMDRTGLLSEARRHSESESSQEGEDNTCDICEKQFSYKRLLLHHKKTKHNMSSGHKRAKILLKDCDVRCLICDIEMKVSTVNEHNQTHISMNMKPRNLYTCIECGDQFKSCSALANHIKLIHRLKQQKLVTNIDPADFCEVVVTKAEPLDCIQSHNDFGEVPGNQDSKATVNLSGFTCPICSKKMPTLISLKRHVNWHTAVGNTLEKKLECFVCKESFRFQCHYKLHMREHYNDTKLDPKHLTCPICSRRSKHLRAAKAHMNFHKQTRFQNKDYQCSICERVFQYRKVYLTHMAIHYKKGDTQNTVVGDIVPNTLDTKVFDGTNTCHHCGKVCSSENSLKHHLIWHNSKTFLYGARHECKICKVKFTNKRRLETHIRSHYEDDNGPFKCTICGKGFTVEHYFQKHVKGHNFDHQSHQKRLEKLRKNKVKCPICNKYYPDLVKLIRHLRRTHPESKMIKEDPDAPPQIYYSCKLCARVFLDERRLQSHEEAHLRKPEFFKCKFCGKNTISLKNHRVHIKAHLTQKYYDDPLKCPHCEETFIKGYDLHHHLRDVHHINETWIAERTAQTLDGPLKDLQCSICLKVLASKGNFERHIDYHNTLRCNYCFDYFSSLRFLEGHLAFSCDKKKLLGDTEVYPKKVKCHICYKAFHLQVKLDCHLRTQHDIIVNREASIGTTEIVCDYCFRVFENEYALSTHKIYHRTVGYYGCIYCNKKFNTITVYRKHKNHHFSQLNVDNPTKCEHCEETFVAFREMIYHMRDVHGDDKEWIVMPKESIEEECPICKKVFFNLHKHLTYHEENKCKKCGEYFFSRADYDNHLCAIESDDEIQILSNGQAPKYEECRFCFKPITKKDSKLKHDKIHRGSGAISCRFCSLKFKTIDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKQVHKSIKKIHYRAIVKPETCVVCGEDFPNLHNHYRAHLLNQCQHCRKYFTSSKVFANHQCDKEDIDPTKVFICGENLKELINSYVPKDEKDDEKYYGHSDEEETDSQPTLEDEESQDTKPNYDAFMAVKSPIISDVLSLYRTEEKNDDKISVVNLTDDDSVGFEDSVSVVVVIDD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -