Basic Information

Insect: Thaumetopoea pityocampa
Gene Symbol: -
Assembly: GCA_017165845.1
Location: WUAW01016332.1:1-4290[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1e-05 0.00099 20.1 3.6 1 23 69 91 69 91 0.98

2 14 2.2e-06 0.0002 22.3 1.5 1 23 97 120 97 120 0.96

3 14 1.4e-06 0.00013 22.9 0.3 1 23 126 148 126 148 0.98

4 14 2.1e-06 0.00019 22.3 3.0 1 23 153 175 153 175 0.99

5 14 3e-06 0.00027 21.9 1.6 1 23 181 203 181 203 0.98

6 14 4.3e-07 4e-05 24.5 1.0 1 23 209 232 209 232 0.96

7 14 3.9e-05 0.0037 18.3 4.2 1 23 238 260 238 260 0.97

8 14 1.1e-05 0.001 20.1 0.8 1 23 266 288 266 288 0.98

9 14 0.00016 0.015 16.4 2.5 1 23 294 316 294 316 0.99

10 14 8.6e-08 8e-06 26.7 0.4 1 23 322 344 322 344 0.97

11 14 2.5e-06 0.00023 22.1 3.5 1 23 350 372 350 372 0.98

12 14 0.092 8.5 7.7 3.8 1 23 378 397 378 397 0.95

13 14 1.2e-06 0.00012 23.1 0.9 1 23 403 425 403 425 0.98

14 14 0.00024 0.022 15.8 3.2 1 23 431 453 431 453 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1e-05	0.00099	20.1	3.6	1	23	69	91	69	91	0.98
2	14	2.2e-06	0.0002	22.3	1.5	1	23	97	120	97	120	0.96
3	14	1.4e-06	0.00013	22.9	0.3	1	23	126	148	126	148	0.98
4	14	2.1e-06	0.00019	22.3	3.0	1	23	153	175	153	175	0.99
5	14	3e-06	0.00027	21.9	1.6	1	23	181	203	181	203	0.98
6	14	4.3e-07	4e-05	24.5	1.0	1	23	209	232	209	232	0.96
7	14	3.9e-05	0.0037	18.3	4.2	1	23	238	260	238	260	0.97
8	14	1.1e-05	0.001	20.1	0.8	1	23	266	288	266	288	0.98
9	14	0.00016	0.015	16.4	2.5	1	23	294	316	294	316	0.99
10	14	8.6e-08	8e-06	26.7	0.4	1	23	322	344	322	344	0.97
11	14	2.5e-06	0.00023	22.1	3.5	1	23	350	372	350	372	0.98
12	14	0.092	8.5	7.7	3.8	1	23	378	397	378	397	0.95
13	14	1.2e-06	0.00012	23.1	0.9	1	23	403	425	403	425	0.98
14	14	0.00024	0.022	15.8	3.2	1	23	431	453	431	453	0.98

Sequence Information

Coding Sequence: NATGACAATCAACAAGCAGAAATATTCATAAATCAAAAtcctgatgatgacgatgaaccgCTATCTAAGCTTCAATGTAAGAACTCCAGGGAATCCAGTCCAGAGCATGCTGATGCGGTTCCTGACGCTGATTGGGCGCTTCCAGACTTGAATGATGaacAAGACAATCATCGACAACAACCATCGAAATTCAATACTAAAAAGCACACATGTGAGGTATGCCAAAAGAAGTTCACTTACCATGGCTCCTTAGAGGTGCATATGAAGGTCCACAATGGTGAGAAACCATATCCTTGTCATCTCTGTGGCACCACTTACACAAATAACAAAGAACTAACCAAACATATAACTATATCTCATATAGTTGATGATAAGTATCCATGCACAATATGTGAGAAGGCATTCGACAAAGCAAAACTATTGAAGAAACACATAAAAGTGCATTTCGTTGAAAAATTCAAATGTACCGAATGCAGCAAAGAGTTTCAAAGGAAGAAAGGTTTGAAAGAGCACATGAAAACGCATACAGGTGAACGTAATTACGCATGTCAGATCTGCAATAAAGCATTCGGCCACAATCAGACGTTAAAATCTCATATGTTGACGCATTCCGGTGAAAGACCTTACGTATGTGATGTGTGTGGCAGAAGGTTCCCTCAACGGACACATTTGAaaagacatatatacataatacatacggGAATCAAGCCTCACACGTGTCATGTATGTTCTAAACAATTTTCTAGCAAAAGTTATTTAGCAATACATGAACGGTTACATACGGGTGAGAAACCATACTCTTGTGAAGTTTGCAAGAAGGATTTTACAGCATACACAACTTTAAAAGTGCATATGAGAGTGCATACTGGTCTTAAACCATATACATGCAGTTTCTGTTCAAGGCAATTCGCCCAAATGGCCAGCTTTAAATTACACCAACGCACACATACCGGTGAACGACCGTTTGCATGTAAAATTTGTAAGAAGCCATTTTCAGACAACGGTTATCTAAAGATCCACATGCGGGTTCACTCCGGTGAGAAGCCATTCTCTTGTGAAGTGTGTAAACGTTGTTTCAGGGAGACTGGTCAACTTAAAAGGCACATGCGTATACACAGTGGCATTAAACCTTATACGTGTAAAatttgtaacaaacaaataggGAATTTGTCTAAACATATGCGCATCCATTCTGAAGATAGACCGTTCTCATGTACGATTTGCAATAAGCAGTTCTCTATCAATGGTAATTTGAGGCTACATATGCGTTTACATACTGGTGAAAGGCCCTTCACTTGTGATATATGTAACAGTCAGTTCACCCAAAGCATTGGATTGAAAAGACACAGATGCATGCACATGAATAAAACAGATAGTTGA
Protein Sequence: XDNQQAEIFINQNPDDDDEPLSKLQCKNSRESSPEHADAVPDADWALPDLNDEQDNHRQQPSKFNTKKHTCEVCQKKFTYHGSLEVHMKVHNGEKPYPCHLCGTTYTNNKELTKHITISHIVDDKYPCTICEKAFDKAKLLKKHIKVHFVEKFKCTECSKEFQRKKGLKEHMKTHTGERNYACQICNKAFGHNQTLKSHMLTHSGERPYVCDVCGRRFPQRTHLKRHIYIIHTGIKPHTCHVCSKQFSSKSYLAIHERLHTGEKPYSCEVCKKDFTAYTTLKVHMRVHTGLKPYTCSFCSRQFAQMASFKLHQRTHTGERPFACKICKKPFSDNGYLKIHMRVHSGEKPFSCEVCKRCFRETGQLKRHMRIHSGIKPYTCKICNKQIGNLSKHMRIHSEDRPFSCTICNKQFSINGNLRLHMRLHTGERPFTCDICNSQFTQSIGLKRHRCMHMNKTDS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01073791;
90% Identity: -
80% Identity: -