Tpit021600.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thaumetopoea pityocampa
Gene Symbol
-
Assembly
GCA_017165845.1
Location
WUAW01027097.1:1227-33178[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0014 0.13 13.4 2.9 1 23 215 237 215 237 0.97
2 20 0.003 0.28 12.4 0.6 1 20 243 262 243 265 0.94
3 20 1.5e-05 0.0014 19.7 5.6 1 23 284 306 284 306 0.98
4 20 7e-05 0.0065 17.6 4.1 1 23 312 334 312 334 0.99
5 20 1.2e-05 0.0011 20.0 4.8 1 23 340 362 340 362 0.97
6 20 6.8e-06 0.00063 20.7 7.9 1 23 368 390 368 390 0.97
7 20 5.1e-07 4.8e-05 24.3 2.9 1 23 396 418 396 418 0.97
8 20 7.3e-05 0.0068 17.5 6.7 1 23 424 446 424 446 0.97
9 20 1.4e-05 0.0013 19.8 6.4 1 23 452 474 452 474 0.98
10 20 3.5e-07 3.2e-05 24.8 1.9 1 23 480 502 480 502 0.98
11 20 3.6e-05 0.0033 18.5 7.9 1 23 508 530 508 530 0.98
12 20 1.8e-05 0.0017 19.4 6.6 1 23 536 558 536 558 0.98
13 20 1e-06 9.3e-05 23.4 5.2 1 23 564 586 564 586 0.98
14 20 6.5e-05 0.006 17.6 6.4 1 23 592 614 592 614 0.97
15 20 1.6e-06 0.00015 22.7 4.7 1 23 620 642 620 642 0.98
16 20 8.2e-06 0.00076 20.5 6.2 1 23 648 670 648 670 0.98
17 20 9.7e-05 0.009 17.1 10.0 1 23 676 698 676 698 0.97
18 20 1.6e-06 0.00015 22.7 3.5 1 23 704 726 704 726 0.97
19 20 0.00012 0.011 16.9 0.3 1 23 733 755 733 755 0.98
20 20 0.0018 0.16 13.1 5.5 1 23 763 785 763 785 0.99

Sequence Information

Coding Sequence
ATGTCTCGGCCTGAACACAGCAATCAACAGATACAACTGACTGTGAGTGAAGACGGCATAGTGACTGTGGTGGAGCCTGCCGGCAGTAAGTTAGTCGATAAGGAGGAGTTACACGAGGCCATCAAGATGCCCTCAGACCACGCGCTAACTGTGCACCAACTGCAACAAATAGTTGGACAACAGGTGATAGACAGCGTAGTCCGCATAGAACAAGCGACCGGCGAACCAGCCAACATATTGGTGACTCACAATCCTGATGGCACCACGTCAATAGAAGCCAGTGCAGCGGATCCATTAGCTGTCAAAGACGAGAAGAGTGCCTCCAAACTGGAGACGGCACAGTTTGCAATACCCGCTGAAATAAAAGACCTTAAAGGCATAGATTTAAAGAACGTGGGAACAATGGGAATGGAAGGAGCGGTCGTGAAGATATCTGCCGGTGCAACCGACCATGATCTTCATGCCATGTATAAAGTCAACGTCGAAGATCTGTCGCAGCTTCTCGCTTACCATGAAGTCTTTGGAAAATTGAACACTGAAggtcaacaacaacaacagcagCAACAGTCCAAAGTGAACGAAGTGGACGTTGAAGCTAGCACAAGTGCTGCCATCTCTGAGGCGGAGTCGTCACCGGGACACCACTCGTGTGACCTCTGTGGAAAATTATTCCAGTTCCGCTACCAGTTAATTGTTCACAGGCGATATCACGGTGAAAGTAAACCATTCACGTGTCAAGTGTGCGGCTCCGCTTTCGCTAATCCCGTAGAACTATCAAGACACGGAAAATGTCATCTTGccGGTGATCCAAATGAAAGGCATGCGAAAAGACTGGCTCAGGACAAGCCGTACGCGTGCACCACTTGCCACAAAACATTCTCTAGGAAAGAACATTTGGACAATCATGTCCGAAGCCATACAGGAGAGACACCATACAGATGCGAGTTCTGTGCGAAAACGTTCACCCGCAAAGAGCACATGGTAAACCACGTCCGGAAACACACGGGCGAGACGCCGCACCGGTGCGACATTTGCAACAAGAGCTTCACCAGGAAGGAACATTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCGCATCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGAGATCGCACACAAACGATACTCCGTTCCGATGTGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCACACGGGTGAAACCCCTCACCGCTGCGATTTCTGCTCGAAAACCTTCACTCGCAAGGAACATCTCCTAAATCACGTCCGGCAGCACACGGGCGAGTCTCCACACCGCTGCAACTACTGCTCCAAGTCGTTCACGCGACGGGAACACCTCGTTAACCACGTGAGACAGCATACCGGAGAGACGCCATTCCAGTGCGGATATTGCCCCAAGGCGTTCACAAGGAAGGATCATCTCGTGAACCACGTACGGCAGCACACAGGGGAATCGCCTCATAAGTGTTCGTTCTGTACGAAATCGTTCACCCGAAAGGAGCACCTCACAAACCACGTGCGACAGCACACCGGCGAGTCGCCGCACCGGTGTACCTATTGCGCCAAGTCTTTCACCAGGAAAGAACATCTCACCAACCACGTGCGACAACACACGGGAGAAACGCCACACAAGTGTACGTACTGTCCGCGGGCGTTCTCGCGCAAGGAGCACCTCAACAACCACATACGTCAGCACACCGGCGACACGCCGCACACCTGCTCGTTTTGTAGCAAGAGCTTCACGAGAAAGGAACATCTCGTCAACCATGTACGgCAACACACAGGCGAAACTCCATTCAAATGTTCGTACTGCTCGAAGTCTTTCTCGCGCAAGGAGCATCTGAACAATCACGTGAACCTTCATACAGGGGAGACACCACACAAGTGTGCGTACTGCACCAAAACATTCTCAAGGAAGGAACATTTAACCAACCACGTCAGattacACACGGGCGAATCACCACACCGCTGCGAATTTTGCCACAAGACATTTACCCGAAAAGAACATTTGACAAATCACTTGAAACAGCATACGGGTGATGCCGCGCATTCGTGCAAAGTGTGCTCCAAGAATTTCACTAGAAAAGAGGATCTTATTACACATATGAGATCACACAGTTGTGGCGAACGTCCTTACAGCTGTGGCGAGTGTGGCAAGTCGTTCCCACTGAAAGGCAACCTGATGTTCCATGTGCGCTCGCACAACAAAACCGGGAAAGTACCATATCGGTGCGACGTTTGCTCCAAGGAGTTCACCTGTAAAgGGCATCTTGTATCTCACCGGCGCACACACGATGAAGGTAACATCTCGGCTGCGGAAGAGAGCGTGAGCGACGCGCCGCCCCACACCGGAGACTGTACCAATAAGTGCATTAAAGTCGAGCCCGTCGATAGGAAGCACGAAATCAGGACATCAACAGAGAATAGACCTGTTGAAATTGTCTCACAAAATCAACAAAGCAACCCTACTGTAATGCAAATAACCAATCAGGTTAGTTATGGATCTGCAGCTTTGGCAAATAAGAGTAGAAAATAA
Protein Sequence
MSRPEHSNQQIQLTVSEDGIVTVVEPAGSKLVDKEELHEAIKMPSDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLAVKDEKSASKLETAQFAIPAEIKDLKGIDLKNVGTMGMEGAVVKISAGATDHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQQQQQQQQSKVNEVDVEASTSAAISEAESSPGHHSCDLCGKLFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICNKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHIRQHTGDTPHTCSFCSKSFTRKEHLVNHVRQHTGETPFKCSYCSKSFSRKEHLNNHVNLHTGETPHKCAYCTKTFSRKEHLTNHVRLHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDAAHSCKVCSKNFTRKEDLITHMRSHSCGERPYSCGECGKSFPLKGNLMFHVRSHNKTGKVPYRCDVCSKEFTCKGHLVSHRRTHDEGNISAAEESVSDAPPHTGDCTNKCIKVEPVDRKHEIRTSTENRPVEIVSQNQQSNPTVMQITNQVSYGSAALANKSRK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-