Tpit005767.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01005179.1:12964-22101[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-09 6e-06 26.6 0.0 3 37 307 342 305 349 0.90 2 2 0.00076 1.1 9.8 0.0 22 37 353 369 351 376 0.86
Sequence Information
- Coding Sequence
- ATGTCGGAAAATAAGGAAATACGGACTTATTTTGGTAGATGCAGATGTTGTCTCAGCTACGGATACTTGAAACGGATGTGGTCGAAACATTTTATTGACGACGTAATCGAAATATATGGCGAAATGCTTATCCAATGTTTTGGTATATCgTTTCAATTTTCCGAGAGTTCCATGCAGGAGGATCAGATTTGTGAACCCTGTATCATGAAGCTGCGTGAGGCCATTAAGTTCAAGAAAACAATCCTTGATGTTCAGGAGGAACTGAGCAAGTTGAAAGATAAAGGAGAGGAGTATTTTGTGAAACTCGAGAATCCATCAGATCACTGCGAAGCTCGTCTCACCAGACAACGTAAACAAGAAGACAGAAACGAACACTCAAGATGGGAGAAGGAGGACGTAGATTATATTGAATTTGAAGAGGTAGAATATTTGGAGGAAGACCATAAGCCTGAAGTCGTGAGAAATACTGTCAATGAGCAATATGGAACAGGGGATCCACTCCTATCGCCATACAGGCAGACGGACCCCGGTGAGTACTCGGACACCGGGAAGGAAGACGCGCAGGACATTGAATTTGAGGAGGTGGAATTTTTGGAGGAAGAAAGTAAACCGGTTATGGAGGAGATTAGCAGGAGGATTATTAGTGAGCAATATGGAACAGGGGATCCACTCCTATCGCCATACAGGCAGACGGACCCCGGTGAGTACTCGGACACCGGGAAGGAAGACGCGCAGGACATTGAATTTGAGGAGGTGGAATTTTTGGAGGAAGAAAGTAAACCGGTTATGGAGGAGATTAGCAGGAGGATTATTAGTGATTTCAAATCACAGCAACCCAAGGTGAAAAAGAAACCTGCGAAAAAGACCAAAAAGCTCCCGAATAGGTTGCGCTACAAGACCTACAAGCAGTACAGCGCCGAGGACTTGACGCATTGCGTGGAAGCCGTCCACACCAAGAGGCTGTCCGTGCAGGAGGCGGCCGACATGTATAATATACCTAGGAAAACCATCGAAGCGAAAGTGAAGGCCTATAACGGTGAGTCGTNNNNNNNNNNGGCGGCCGACATGTATAATATACCTAGGAAAACCATCGAAGCGAAAGTGAAGGCCTATAACGCACTTTCGCGGCCGCTAAGTCTATGGTAA
- Protein Sequence
- MSENKEIRTYFGRCRCCLSYGYLKRMWSKHFIDDVIEIYGEMLIQCFGISFQFSESSMQEDQICEPCIMKLREAIKFKKTILDVQEELSKLKDKGEEYFVKLENPSDHCEARLTRQRKQEDRNEHSRWEKEDVDYIEFEEVEYLEEDHKPEVVRNTVNEQYGTGDPLLSPYRQTDPGEYSDTGKEDAQDIEFEEVEFLEEESKPVMEEISRRIISEQYGTGDPLLSPYRQTDPGEYSDTGKEDAQDIEFEEVEFLEEESKPVMEEISRRIISDFKSQQPKVKKKPAKKTKKLPNRLRYKTYKQYSAEDLTHCVEAVHTKRLSVQEAADMYNIPRKTIEAKVKAYNGESXXXXAADMYNIPRKTIEAKVKAYNALSRPLSLW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -