Tpit016989.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- -
- Assembly
- GCA_017165845.1
- Location
- WUAW01018982.1:17053-32347[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-11 4.8e-08 33.3 0.0 4 39 150 186 147 190 0.88 2 4 3.7e-11 5.2e-08 33.2 0.2 3 39 203 239 201 243 0.91 3 4 1.2e-15 1.6e-12 47.6 0.2 2 45 257 301 256 301 0.96 4 4 1.9e-17 2.6e-14 53.3 0.0 1 41 308 349 308 352 0.94
Sequence Information
- Coding Sequence
- ATGCCAGGTTACAGACTCTTTGGAATTTCGAGGGTGAAGTGCGAACCGCTCTCGGACGAAGATGACAGCAATTCAGAGATCGCGCACAGTGCGTTTTATAACCAGGACGGTGGACTGGAGGAGCTGGCACCGTTGGCGCCGCCGGGGCCCGCCGCTACGCCCGTCTGTGTGAAACAAGAACGTGCTGATACTCCGCCGGCCGCTACCTTGGAGACGTTGGAGTCAGCGCCGTACACTAAGGGCGGCATGCTATTTGACAGACGGAGTATGGGCATCTCGAACAGGGATGCAGTGCCCGATTCCATCGACTTCATGCCGCTTTTGGCTGTGAAGGACGAACCTCTGTCGGAAGGAGAACAGCAGCAGTTAAGCGGCGAGGACACGAGCGACTCGTCTGGTAGACAGTCGTCGCCGGCCCGCGTCAGCCCCAAGAGCTGGACGCAACAGGACATGGAGCGCGCGCTGGACGCGCTCCGGGGCCACCGGATGAGCCTCACCAAGGCGTCGGCGGCGTACGGCATACCGTCCACCACCCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGACGGGGTCGCCAAGACGTGGAGCGACGCCGACCTGCGCGGCGCGCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTGTCGGCGCCGTTCAACGCGGCGCCCACGGCCTGGCGCCGCGCCGACCTGCAGCTCGCGCTCGCCGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGCACTACGGGATACCCACCGGAACATTATACGGAAGATGTAAACGCGAAGGCATCGAACTTTCTCGGTCCAACCCGACGCCGTGGTCGGAAGACGCCATGGCGGAGGCTCTGGAAGCAgtcaaACTAGGCCAGATGTCGATCAACCAAGCAGCCATACACTACAATCTTCCCTATTCATCTCTGTACGGCAGATTCAAGAGATGCAAGTACGTGGTTCAGGGCATGCAGTCGAGTCAACAAACGCGACACGATCTGTCAAAAATCAACGAACAGGAGAACCAAAATCAAGTGCACGACTCGCACCATTACCAACAGCCGCCATCACACCACGAACACGCAAATATGCACACATACGCGCACACATTACACGATTACACGCAGGAAACGCCCGCACACGTGATACAGGATCAGTACGGTCAACCGATGTATTACAGTGAAGGGTATGGCATCGCGACCAGCTGA
- Protein Sequence
- MPGYRLFGISRVKCEPLSDEDDSNSEIAHSAFYNQDGGLEELAPLAPPGPAATPVCVKQERADTPPAATLETLESAPYTKGGMLFDRRSMGISNRDAVPDSIDFMPLLAVKDEPLSEGEQQQLSGEDTSDSSGRQSSPARVSPKSWTQQDMERALDALRGHRMSLTKASAAYGIPSTTLWQRAHRLGIDTPKKDGVAKTWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRAGASSVQRAAAHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMAEALEAVKLGQMSINQAAIHYNLPYSSLYGRFKRCKYVVQGMQSSQQTRHDLSKINEQENQNQVHDSHHYQQPPSHHEHANMHTYAHTLHDYTQETPAHVIQDQYGQPMYYSEGYGIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -