Tmat010276.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419206.1:2472175-2480160[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.1 2.8e+02 2.6 1.4 1 23 203 225 203 225 0.92 2 13 1.2 84 4.3 1.7 1 23 319 342 319 342 0.88 3 13 0.0033 0.23 12.3 0.3 2 20 380 398 379 400 0.94 4 13 3.2 2.2e+02 2.9 1.1 1 14 647 659 647 666 0.74 5 13 5.2 3.6e+02 2.3 1.1 1 23 679 701 679 701 0.93 6 13 4.1 2.8e+02 2.6 0.6 2 23 752 772 751 772 0.85 7 13 1 70 4.5 7.4 3 23 816 836 815 836 0.96 8 13 0.12 8.4 7.4 0.4 2 23 852 873 851 873 0.96 9 13 4.8e-07 3.3e-05 24.4 2.7 1 23 879 901 879 901 0.99 10 13 0.00032 0.022 15.5 0.1 2 23 907 928 906 928 0.96 11 13 0.44 30 5.7 2.5 6 23 939 957 939 957 0.97 12 13 0.39 26 5.8 0.4 1 20 964 983 964 987 0.93 13 13 0.00029 0.02 15.7 0.7 3 23 996 1017 995 1017 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAAGCATCTCGAAAAAGATCAAGAAAGTCTAAATTAGTGCCTCGAGATTGTGCTGTGAATGAAGATGATATTGAATTGCAGGTTCCCTCCACAACGCTCTACAAAAGCGTGACCCAGTACACAAAAGAAGGTACACCAACCACGTCAGTGGTAGTCGTACGCGATAAAAGCGTATTGGATAAAATTAACGCACCAGCTAAAGAAATAAAAACCGAACCCACAACCCGAAAATTCGAAATTGACGTAGAAGTAGAGTCGTGCGACGACGAATTTAATACCGAAACCTACGATACTGATTCTGATCGATTATCACCGATCAATAAATATCCAAGAGTAAATGGTATAAAATCTGAAAATGTAGAAATACGAAAAGTGCCTATAATTTTAACACACGAAAATATTCTAGATGAAACTAATAACATACTCAACAGTGCAACGAACATTGCCGACAAAATATTAGGTTTTTGCGTCAAAAACACAATAGGTTTTGAAGTGGAACGGAAGCTAGATGAAGGCTTGCATGAGCATCGTCTCCAAAAAGCTCTAGATGCGTGGAGAACATGGCAGTTTCGGAGCTTCCACAGAGAGTGTCCTCTTTTCTATAAATGCTACATCTGTGTAAAATCCTGGTGGCATCTTTCAGATTTCCGTGACCACATTTCTCAGCATCCACACCTTACCATCGCCCTAGAAAGTAAAATAAAGTATTTACTGCACGAATGTAACATAGTAGCTTATCAACCATCAACTAAATTAGGTTCAGTGATTAATATACATACAGACGGTCTTTGCTTCCGATGTGGTAAAGATTTTGACGCCCATGCGCGGAAATCAAGAATTTTACAGAAGTATTACGGCAATGAGGGTTGTACGAAACAATTTTATACTTGCATAGGGTCTAGAGACCATGTATTGCACTGTGATCAATGTAACGTCAAAGATAAATTGTTCAATTGTATTGTCTGTAAATCAAAATTCGATACTGTAAGCCAACTAAAAGATCATTTAGAGTTATGTCACTTAGTTCGCTCAGACCTTCCTATAATGTCCCGTTATAAAATCTGCAAGTATTGTTCTGAGAGGTATTCTTGCAGTTACTTGCATAAATGTGGAAAAAAGGGACTGCGTTCACAGTGTCCTCATTGCTTTAAAAGCTTTGCCAATAGGATGCTCATGGAGGTCCATCTGGATAACTCTAAGCAGACTTATAAATGCGAAATTTGTGAAGAGGATTTGGTGTGGAGTTGTCAAAAGTATGAGCATATGATGGTGCATACTGATAATTTTACGATGATAAGAAGGTGCATTAAATGTAAGGGCTGGAAGGTGTTTTTGAACAATGAGAGCACTGTGATGCATCGTATATTGCACCATGATTCCCGGCACCCTAAACATCAGGGTTATTTTCCTAAAATCTTAGTACCGAAATCCTGCATATATTCGAGCTTAGAAGAATCTGAAAAAATCCAATCTGAATCGGTACTGGAACCACAGGAATCGGTACCGGAACTACGAAAACCAAAATCGGAAAAAGAGCCAGCAGACATAGATGACAGTCCACAATTTGCAGAAGAGCCAGAAGATATAGATGACAGCCCAAGACTAGTAATCAAAGAGGAACCGGCAGATGAATTTGAAACACATGAATATACAAATGAAGAAATGGAAAGTTTAGTTCCCCAAGTAATTGTTAAAGAAGAAATCACAGAAGAGGAAGAAGAATACGAGGACGACATTATAAAGCTTAACATCAACATCGAAGATTTATTAGCTAAACAAGGATCGAGTCAAACATCGAATCAGGAATCGATTGATGAAAATCCAGAATCGGACGAAGATCCCGACAACGCAGAATCATTTTCAGACCAACCGATTAAAGAAGAATCGCTACCAGAACCGGAAGTAGACTGGTTAGGAAATCCGAAACGCCTATACAAATGTACTCAATGCGGTTTCAAAGCTAGGCACAGAGAATACAAAGATCACGTAGAAAACGACTGCTTGAGAGCTACAATTAAAAGTAAACGTTATAGATGCATAAAGTGTAATATTGCATATACAACAATGAGAAAATTCCTAATACACTTCATCAATCACGGATATAGACCTTTATCCTGTCCGGAGTGTCTAAAACAATTTACCTGTACCACAAAATTGGGTCCACACGTAGTCTCACATGTCAAAAACAGTTTTGTCCGTGTGAAACTGATTACTACCCAAGGAGCAACTAGAAAAAAACCCGATAATCAGTGCACTAAATGTGGGGAGATCACAGATATGAAAGATTTCTTCGATCACTGGACATCCCATATCAGTGAATATAGTAGTTCGAAGAAGTGGGTTTATCCCAGTGAAGCGAGATTATCTAGATTGGGTGGGGAAATTGATGGGGGTGTGCTAAAGGAATTTATAAATGGCTTGTACAAAATGCCAAAAGATTGCACCAAGTGTCACCGGCATTTCAACCGAGTCAGTGAATGCAAACGTCACATCATTGAGCATCTACTAACAGATGCTTACTCCCAAAAGCACATACACGGAGACCTGAAATGCCAGATCTGTGGAGCTGGTCACCCTAACGCAGAAAAATATAAATCGCATATGCGAGACCATGCGCACTTACCAGTGTATAAATGTGAATTGTGTGACCGTACGTTCAGTGATTCAAGTAACTTTACGAAACACAAAAAAGTGCATAATTTAAAAGTGAGCGTGTGTGATTTGTGCGGTAAAAAGTTCCAGGCTAAGGAGTCTCTAGCGAAACATATTGAGATACACAAAACCACGGAACCAATAACGTGCATTCCATGCAACAAGGTATTTTATTTCGATTCCTCATACCGACGTCATGTAAGACACTTCCACGAAAGAGTAACCATGGGTTTCCGATGCATCATATGCGGCGAGCGATTCGAAACTCTCAAACATAAATGGGACCATATGTGGTTAGTACATAAAGAGAGAAAAAACAAAGCGGATTGTCCGATATGCTCTAAGTCTTTTAGAAAGTATTCCGATGTCCGCTCTCATGCTAAAAAGGATCACAATATGGAAGTATCGTTGTTGAGCGTTAAAAATGCCACCAAATCTATGGTTGATATCGCACAGTTTTTGAAGAAATCTAATCATTTGAAAATAGGACGTGACGAGACGTTGGTTGTGTATGATCCTGATACTTAA
- Protein Sequence
- MSEASRKRSRKSKLVPRDCAVNEDDIELQVPSTTLYKSVTQYTKEGTPTTSVVVVRDKSVLDKINAPAKEIKTEPTTRKFEIDVEVESCDDEFNTETYDTDSDRLSPINKYPRVNGIKSENVEIRKVPIILTHENILDETNNILNSATNIADKILGFCVKNTIGFEVERKLDEGLHEHRLQKALDAWRTWQFRSFHRECPLFYKCYICVKSWWHLSDFRDHISQHPHLTIALESKIKYLLHECNIVAYQPSTKLGSVINIHTDGLCFRCGKDFDAHARKSRILQKYYGNEGCTKQFYTCIGSRDHVLHCDQCNVKDKLFNCIVCKSKFDTVSQLKDHLELCHLVRSDLPIMSRYKICKYCSERYSCSYLHKCGKKGLRSQCPHCFKSFANRMLMEVHLDNSKQTYKCEICEEDLVWSCQKYEHMMVHTDNFTMIRRCIKCKGWKVFLNNESTVMHRILHHDSRHPKHQGYFPKILVPKSCIYSSLEESEKIQSESVLEPQESVPELRKPKSEKEPADIDDSPQFAEEPEDIDDSPRLVIKEEPADEFETHEYTNEEMESLVPQVIVKEEITEEEEEYEDDIIKLNINIEDLLAKQGSSQTSNQESIDENPESDEDPDNAESFSDQPIKEESLPEPEVDWLGNPKRLYKCTQCGFKARHREYKDHVENDCLRATIKSKRYRCIKCNIAYTTMRKFLIHFINHGYRPLSCPECLKQFTCTTKLGPHVVSHVKNSFVRVKLITTQGATRKKPDNQCTKCGEITDMKDFFDHWTSHISEYSSSKKWVYPSEARLSRLGGEIDGGVLKEFINGLYKMPKDCTKCHRHFNRVSECKRHIIEHLLTDAYSQKHIHGDLKCQICGAGHPNAEKYKSHMRDHAHLPVYKCELCDRTFSDSSNFTKHKKVHNLKVSVCDLCGKKFQAKESLAKHIEIHKTTEPITCIPCNKVFYFDSSYRRHVRHFHERVTMGFRCIICGERFETLKHKWDHMWLVHKERKNKADCPICSKSFRKYSDVRSHAKKDHNMEVSLLSVKNATKSMVDIAQFLKKSNHLKIGRDETLVVYDPDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -