Basic Information

Insect: Thalpophila matura
Gene Symbol: -
Assembly: GCA_948465475.1
Location: OX419203.1:3715590-3716717[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.028 1.9 9.4 0.2 2 23 43 65 42 65 0.94

2 8 6.2e-06 0.00042 20.9 0.4 1 23 160 183 160 183 0.96

3 8 0.1 7 7.7 1.9 3 20 190 207 189 209 0.94

4 8 3.4 2.4e+02 2.9 4.9 3 23 218 239 216 239 0.85

5 8 0.00026 0.018 15.8 2.6 1 23 246 269 246 269 0.96

6 8 0.0067 0.46 11.4 2.3 1 23 274 296 274 296 0.96

7 8 1.9e-06 0.00013 22.6 0.7 1 20 302 321 302 324 0.94

8 8 9.1e-06 0.00062 20.4 3.1 1 23 330 353 330 353 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.028	1.9	9.4	0.2	2	23	43	65	42	65	0.94
2	8	6.2e-06	0.00042	20.9	0.4	1	23	160	183	160	183	0.96
3	8	0.1	7	7.7	1.9	3	20	190	207	189	209	0.94
4	8	3.4	2.4e+02	2.9	4.9	3	23	218	239	216	239	0.85
5	8	0.00026	0.018	15.8	2.6	1	23	246	269	246	269	0.96
6	8	0.0067	0.46	11.4	2.3	1	23	274	296	274	296	0.96
7	8	1.9e-06	0.00013	22.6	0.7	1	20	302	321	302	324	0.94
8	8	9.1e-06	0.00062	20.4	3.1	1	23	330	353	330	353	0.97

Sequence Information

Coding Sequence: ATGACTGGGCATTTCTTTTTTGTTCTAGACAAGCAAAATGACCCGAATTTCATCGCTAAACGGAACGCCGAGATTATAGTGAAATATTCAACCGTTTACCCCTTCAAGCTGCCCGAAGATAACATGGTTTGTGTTTACTGTTGCGAGACGTATCCCGATCCGGCCGAATTTAGAACGCACATGAACGAAGAACACGAAACGTTTAATCCCAAAATGGCATTTGTCCATTGCTCCGAAGGGTACATAAAAGTTGACTGCACTCATATTAACTGCAGGCTCTGCTTCAAACATTACCAGGATCTGGATCAAATTGCTGACCACCTCTACTCTGAACATAAGAAGCCCCTGGATTTAACTGTCGCGTTAGGGTTACAACCATTCAAGTTGGAAAACAACAAACTGTTTTGCGCCATTTGTCCTGCTAAAGCACTATGCTTGCGGCAGCTCAGTAGACATACGCAAAGCCATTTCTGGAGATACACGTGCGAAGCGTGCGGTAAATCCTACGCGACGAACACAGCACTGCGCAGTCATATAAGATTCTCGCATATAGGCAACGAAAAGATATGCCGCAAATGTAAATGTACCTTCAGCTCCATGGAGGAAAAAAGGAAACATATGGCGGAGTCCCAAAGATGCTGGTCACATTTGTGCTGTGTTTGCGGAGAAAGATTCATATCCTGGCATGTTAAACAACTTCATTTGGCTGAGTGCCATGGAGTTGAAAAGAAGGTTTACGTGTGCCCTGAATGTGGAGAGATTTTTCATCAACGTAAGAAATATAGGACACATTTCAGATTGTCTCATACAGACGACAATTATGTGTGCTCTTGTTGCGGCATGAAGTTTGAAACCAAAAAGACTTTAGAAGAGCACAGAGTCTCACATACTATGGAGAAACTGTTTCCATGTACAGTGTGCTCCAAATCATTTCCTAGGAAGAAGAATTTAAACCAACACATGTGGATTCACATGGAACATAAACGGTTCGAATGCAAACTCTGCAATAAGAAGTTTAATCAGAAAGTCAGTTGGAAGACTCATATGAAATCTTACCATCCCGAATTAGGGGATTTTGAAGGAAAGAATAATAATTTGAAACTAATGTTCTCCGTTTTAACTGAATAA
Protein Sequence: MTGHFFFVLDKQNDPNFIAKRNAEIIVKYSTVYPFKLPEDNMVCVYCCETYPDPAEFRTHMNEEHETFNPKMAFVHCSEGYIKVDCTHINCRLCFKHYQDLDQIADHLYSEHKKPLDLTVALGLQPFKLENNKLFCAICPAKALCLRQLSRHTQSHFWRYTCEACGKSYATNTALRSHIRFSHIGNEKICRKCKCTFSSMEEKRKHMAESQRCWSHLCCVCGERFISWHVKQLHLAECHGVEKKVYVCPECGEIFHQRKKYRTHFRLSHTDDNYVCSCCGMKFETKKTLEEHRVSHTMEKLFPCTVCSKSFPRKKNLNQHMWIHMEHKRFECKLCNKKFNQKVSWKTHMKSYHPELGDFEGKNNNLKLMFSVLTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00852175;
90% Identity: iTF_00425864;
80% Identity: -