Basic Information

Insect: Thalpophila matura
Gene Symbol: -
Assembly: GCA_948465475.1
Location: OX419203.1:4424122-4425141[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.027 1.8 9.5 0.5 1 23 39 62 39 62 0.92

2 8 0.25 17 6.4 0.4 2 23 134 156 133 156 0.91

3 8 0.016 1.1 10.2 1.0 1 23 160 183 160 183 0.93

4 8 0.0002 0.014 16.2 1.5 2 23 187 209 186 209 0.93

5 8 0.021 1.4 9.8 0.1 2 23 215 237 214 237 0.93

6 8 0.00075 0.052 14.4 1.9 1 23 244 267 244 267 0.96

7 8 1.1 72 4.5 6.1 2 20 274 292 273 295 0.91

8 8 1.3e-09 9.1e-08 32.5 2.1 1 23 301 323 301 323 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.027	1.8	9.5	0.5	1	23	39	62	39	62	0.92
2	8	0.25	17	6.4	0.4	2	23	134	156	133	156	0.91
3	8	0.016	1.1	10.2	1.0	1	23	160	183	160	183	0.93
4	8	0.0002	0.014	16.2	1.5	2	23	187	209	186	209	0.93
5	8	0.021	1.4	9.8	0.1	2	23	215	237	214	237	0.93
6	8	0.00075	0.052	14.4	1.9	1	23	244	267	244	267	0.96
7	8	1.1	72	4.5	6.1	2	20	274	292	273	295	0.91
8	8	1.3e-09	9.1e-08	32.5	2.1	1	23	301	323	301	323	0.99

Sequence Information

Coding Sequence: ATGGATATCATGGATAGACTCGTAGAAGAGAAACGAAAAGACCAGCTCGCGACTGTACTAACAGTTATCATCCAAAACTCCACTATAGTGCCTTTCAGGTGGCACAAGAGCAAATACATGTGCTTCTATTGCCGCTCCCTTTTCGTGCAGAGCGCACAATTGAGAGAACACACAGATTTAGCCCACAGAGAGATCAAAATCCGAGATATCATTACAAGGACCTTATATAGACGCGGCAGAACCAAACTAGATATCTCAAACCTTTGGTGCACGTGTTGCGAAAGCGAATTCCAAGATTTTCAATCATATTTGGACCATTTAAAAGAGACTCATGGTCTTAAATTAAACCGAGAAGCTTCTCAATATTTCGTCTGCTTTCATTTAGCTGATAATGGAATGTCCTGTTTGGAGTGTGGACAGTATTTCCGATTCTTTGGACCCCTACTCCTCCACACTTACAAATCTCATATCGAACAGTTTCTATGCGAGGTCTGCGGGCAAGGATATGTTGGGAAGCATAATGTACACAACCATGTCAAGCAAATTCACAGCATAAAGTCCTGCAAACATTGTCATGAGATTTTTCCAACGCAGTATGCTTTGACGATTCACGTGGAAAACGTACATCGTACAGACAAGCTGCAATGTCCGATGTGCCCTCAGATACTAGGGAATAGGTACTTGAAGAAACGTCATATGGCGTTGGTACATGACTGCAAAAGTGCGCAGTTTGTTTGCGAATTTTGCTCTAAGATTTTTACAAGGAATAATAAGTATGTTCAGCATAAGCTTCGCGTTCATTTTAAAGAGAAGAATTGTACGTGTGAGGTTTGTGGATACAAAGCGTTCAACATGGACTGCTTGAAGAGACATATGGTGTGCCACGACGACGCTCGCCCCTTTAAATGCGAGATTTGTGACAAAACGTTTAGAAGGAAGAAGAATCTTGTGATACATATGAGGACGCATAGAATTGAGGGTGTTCTCGATGTTGATAGCTTATTGGAGGTTTCTGAATAA
Protein Sequence: MDIMDRLVEEKRKDQLATVLTVIIQNSTIVPFRWHKSKYMCFYCRSLFVQSAQLREHTDLAHREIKIRDIITRTLYRRGRTKLDISNLWCTCCESEFQDFQSYLDHLKETHGLKLNREASQYFVCFHLADNGMSCLECGQYFRFFGPLLLHTYKSHIEQFLCEVCGQGYVGKHNVHNHVKQIHSIKSCKHCHEIFPTQYALTIHVENVHRTDKLQCPMCPQILGNRYLKKRHMALVHDCKSAQFVCEFCSKIFTRNNKYVQHKLRVHFKEKNCTCEVCGYKAFNMDCLKRHMVCHDDARPFKCEICDKTFRRKKNLVIHMRTHRIEGVLDVDSLLEVSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -