Basic Information

Insect: Thalpophila matura
Gene Symbol: -
Assembly: GCA_948465475.1
Location: OX419198.1:2471416-2484570[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00014 0.0096 16.7 1.7 1 23 258 281 258 281 0.96

2 9 0.032 2.2 9.2 6.2 1 23 288 310 288 310 0.98

3 9 3.4e-05 0.0024 18.6 3.3 2 23 342 363 342 363 0.98

4 9 0.0002 0.014 16.2 1.8 1 23 367 390 367 390 0.96

5 9 0.4 27 5.8 1.4 3 20 408 425 406 430 0.90

6 9 0.19 13 6.8 7.3 2 23 492 514 491 514 0.93

7 9 3.5 2.4e+02 2.8 0.1 1 23 526 547 526 547 0.78

8 9 0.00036 0.025 15.4 1.2 1 23 553 575 553 575 0.98

9 9 2.2e-05 0.0015 19.2 2.5 1 23 581 604 581 604 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00014	0.0096	16.7	1.7	1	23	258	281	258	281	0.96
2	9	0.032	2.2	9.2	6.2	1	23	288	310	288	310	0.98
3	9	3.4e-05	0.0024	18.6	3.3	2	23	342	363	342	363	0.98
4	9	0.0002	0.014	16.2	1.8	1	23	367	390	367	390	0.96
5	9	0.4	27	5.8	1.4	3	20	408	425	406	430	0.90
6	9	0.19	13	6.8	7.3	2	23	492	514	491	514	0.93
7	9	3.5	2.4e+02	2.8	0.1	1	23	526	547	526	547	0.78
8	9	0.00036	0.025	15.4	1.2	1	23	553	575	553	575	0.98
9	9	2.2e-05	0.0015	19.2	2.5	1	23	581	604	581	604	0.97

Sequence Information

Coding Sequence: ATGTCGGACTTAAAAGTTTGTAGAATATGTCTTCGAACGGAGGCAAAAATGTACCATTTCAATTTGTATCAACTCAAGTTTTATTACGAAGAAGTTATGGCTATGCAGCTGAATGAACAAGATGGACTACCTCAGTACTTTTGTTATGAGTGTGCGACAATGTTGCACAAGTTCCACAAGTTTAAGGAGAAGTGCTTCAGCGGTCAAAAGATTCTCAGAGAGCTGGCTTGGAGAGGGCCTATCACCTACGAAGCAATTTACAAAGTCGACCGTACCAACACAATGCTGATGTCACCAGTAACAGTAATCACCTTGACCGAACGAATCAAAACCTACACCACAAAAGATAGTATAGAAGATGAAATCTTTAATACACAAAAAAAAGTAGAAAAAATAGAAAATATTGAACTGGACTACTTCAGCGAAACATCCATCACCGGAGATCAGGATCCAATGCTGGACTTTGATGAAGTGAAGATTATTGAAGACATACAAGTCACATTTCAAGAAGAAAACATAAAAGTTGATAATGATAATGAAAAATCAGGTATAGAACCTTTTAGTCCTTCAGCGGTTTACGTTGAAGGTGAAAAAGGTATAATGAAAATAAAATGTGAAGAAATTAAAGAAAAAAAGAATGGTGGCAAAGAAAAGTGTTACGGAAGAAAAATTTTAGACAGTACTCATTGGAAAAGGTTGTCGTTAAGTGAGGAAGAAGCCGTGAGGAATTTTAGAGCACGAGCTGAGGATAAAAAGTATGTAAAAGCCGCTTACAAATGTACCGACTGTTTAAAAGGTTTCTCGAAAAAGGATATGTTGGACAGACATACACAACTGAGGCATGTTAAGGAGCTGGGTCCCTACGAATGTCGATTTTGTAGAATGCGGTACCGACTAAACTGTTACTTGAAGAAACATATGAGGGAGCATTATTTCAAGTATGAATGCTTGCGGTGTCACCTCGTCTGTCCTTTAGAAAATTCAGCCCTCGTTCACGATGAGTACCACAGTGGAATCACAAGGAAATGTGATTATTGTGATGAAGAATTTAGGCATTCGTCAACATACTACACGCATTTACGCACTCATCGCAGCGAACACGTGTGTACGCTGTGCGGCGCGTCGTTCGTCAGTAAGGCGGGGCTACATCAACACAAACGAGTCAAACATATTATTGTTGAAATTGATAGTCCTGACGACGACGAAGAAGTGGACACATTCTGCCAGCGATGCGACATGCGGTTTGAGACGCGGAAGGCATACGTTGAACACTTATTTCACTCCGCACATCATATGGATGAGGAGGACACTGAATACACGGATGAAAGTAACAAAAAAGTATTAGGGAAGAAGGTACAAGAAAAGATAACAAACCGATTAAGAAGACGACCAATAGACGACGATGTTTTCAACGTAACAAAAGATACCAAAAAAAAAGGAAGGAAATATAGGAGAAATCCGAAGAAACCCACAACGTGTCACCAATGCGGCAAACACTTCGACACACAAGCGGCCTGTTGGAAGCATCATTTGTCTGAGCACCCGAGAACCTCGTTCTACGGCCCCGGCGAAAGATACATCTGTGAGATATGCGGCTCTTCCTTAGCTCCGGGCAGCATCAGGACCCATAAGAACATGCATACTCGAGAGAAGATACACACCTGTGATACTTGTGGGAAGCAGTTCTACGCGGTGGTGGGGCTGAGGCGACATCAATTGACGCACACTGGAGAGAAGCCTTACGCATGTTCTTTGTGCGACAAGCGATTCACACAGAGCAACAGTATGAAGCTACACTACCGCACTTTCCACTTGAAACAACCTTATCCTAAGAGAAACAGAAGAAAAAACAAGGATGAGCCTAAAACGGCAGATGTAGAAGATTCCAACAGCGATGAGGACTCGGACAGTAGTTTGCCCGACATCGAGCCCGAGCTGCCCGGCGCGGGAGTCGAACCCGTGTCCGACGCAACCGACAAGCCATCTGATGATAGCATACACTACTTGACGCTGACGTAA
Protein Sequence: MSDLKVCRICLRTEAKMYHFNLYQLKFYYEEVMAMQLNEQDGLPQYFCYECATMLHKFHKFKEKCFSGQKILRELAWRGPITYEAIYKVDRTNTMLMSPVTVITLTERIKTYTTKDSIEDEIFNTQKKVEKIENIELDYFSETSITGDQDPMLDFDEVKIIEDIQVTFQEENIKVDNDNEKSGIEPFSPSAVYVEGEKGIMKIKCEEIKEKKNGGKEKCYGRKILDSTHWKRLSLSEEEAVRNFRARAEDKKYVKAAYKCTDCLKGFSKKDMLDRHTQLRHVKELGPYECRFCRMRYRLNCYLKKHMREHYFKYECLRCHLVCPLENSALVHDEYHSGITRKCDYCDEEFRHSSTYYTHLRTHRSEHVCTLCGASFVSKAGLHQHKRVKHIIVEIDSPDDDEEVDTFCQRCDMRFETRKAYVEHLFHSAHHMDEEDTEYTDESNKKVLGKKVQEKITNRLRRRPIDDDVFNVTKDTKKKGRKYRRNPKKPTTCHQCGKHFDTQAACWKHHLSEHPRTSFYGPGERYICEICGSSLAPGSIRTHKNMHTREKIHTCDTCGKQFYAVVGLRRHQLTHTGEKPYACSLCDKRFTQSNSMKLHYRTFHLKQPYPKRNRRKNKDEPKTADVEDSNSDEDSDSSLPDIEPELPGAGVEPVSDATDKPSDDSIHYLTLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440496;
90% Identity: -
80% Identity: -