Basic Information

Insect: Thalpophila matura
Gene Symbol: -
Assembly: GCA_948465475.1
Location: OX419206.1:900980-932939[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00035 0.024 15.4 2.8 1 23 454 476 454 476 0.99

2 6 0.048 3.3 8.7 1.1 1 23 494 517 494 517 0.91

3 6 0.0052 0.36 11.7 0.4 2 23 524 545 523 545 0.95

4 6 0.00091 0.062 14.1 0.1 2 19 553 570 553 572 0.95

5 6 0.00011 0.0077 17.0 7.8 1 23 586 608 586 608 0.95

6 6 2.4e-05 0.0017 19.1 0.1 1 23 613 635 613 635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00035	0.024	15.4	2.8	1	23	454	476	454	476	0.99
2	6	0.048	3.3	8.7	1.1	1	23	494	517	494	517	0.91
3	6	0.0052	0.36	11.7	0.4	2	23	524	545	523	545	0.95
4	6	0.00091	0.062	14.1	0.1	2	19	553	570	553	572	0.95
5	6	0.00011	0.0077	17.0	7.8	1	23	586	608	586	608	0.95
6	6	2.4e-05	0.0017	19.1	0.1	1	23	613	635	613	635	0.98

Sequence Information

Coding Sequence: ATGGCGCTTTGCGAAAGTCAGCTGGATTCTGCGTTGCCGCAGTTGAAACGAGAGGAGAGCAACGAGGGGGGTCAGAAGAAGACTCCCGACAAGAAAACCAAGGTTGAACACAACGGGGAGATTTATGGGTTGAATCAAGTGCCTGGCGGGTTGCCGCTATCCGTGGACTACCGCTCTCCTGTATCACACTTCGTACCGCCAGAGTTGTATGCTGCGAGACAGAAACAGGAGCCAATCAGCACTGCTGAGACCAGCGATCCACCGACTCCTGTCAAACGGAAGCGAGGCAGGCCCAGGGTGGATAAGACGAGTCCAGAATATCTGGCTAACTTGGCAGCCAGAAAACAGGCCAAGGAAATGGCGGCAATGATGAATAACAGGACCCCTGAAAGTGGGGAAAAGCGTAAGCGCGGACGCCCACGCGTGGACAAATCGAGCCCAGAGTACCTAGCTAGAAAGAGGGCGAGGGAGTTAGAAGCGTTGGAGAGAAAAGCTAAGAGGGAATACAAGCGACGCGCTACAGGAGATTCGGCAGCTTCGTCATCAGCTGGAGAAACTACTCCGAGGACCAAGAGGAAATATACTAAGAGGACGCCGAGTGCCAAGAAGGATGCTGCTCCTTCGACAGAGCGTGTGAAAGGCAAGCGCGGCAGACCGAGGAAGGTGGACCAGCTAGCGGCGAATAACAAGCAGCAACCACAGCCTAAGATTCGCGTCAGGAATAACCTGATGCCGGTCAACTCTGAGCCGATCACATTGGATAGCGATGATGAGCCGGATCTGGGGTCACCGAGTCAAGCTTCAGACTCACTGAGTTTGGACGAGAACCTGCGAGCGTTAAGACATATTCATGAGAAATACGCTAATATTGATAAGGATGATCTATACGACACCCACCTGCTGGCCGTCAACTTCAAGAAGCCACTGGACTCTCAGCGAAGAGATGACGACGAGGTTCTGTCAGTCAGGAGTTCTGAAGGATGCGCTTCTGGCAAGGAGATGGAGACCAGGGTGGAGAAATTGGAAGATAGTTCCAATTCGGACACCGACAGCAGTAGTTCTGGATCTGGCAGTTCCAGTTCAGGATCCTCTACATCATCGAGCTCCGACTCCTCGAGCTCATCAGACAGCTCAGACACTGAGTCAGAATCTGGTGATGAAAAACCCAAGACTGAAGCGCCACCACCGGTGGTCAATCATACCACCAATGATGATGACAGGTCGTTCGGCGCCTGGTCGTACAGCGGGCCGGCGACCGACTCCGGTTCCGACTCCGACCCCGAACGGGCCGCGGACCCGACAGCGCCGGCCTCGCACGACGAGATCAGCGAGTCCGAAAACGAGTCCGCTGACAAGAGTTTCCAATGCCACATCTGTTCAAAGTGGTATTCTACGAGAGTTACTCTGAAGATCCATCGTCGCGTACATCAGAACCGCGGCGGCGGTAACTCGCGGTCGCGCGCGCGATCTTCGGACAGATACGAATGTGATTGTTGCAGCGAAACGTTCAACAGACGCGAGAAGCTATGGGAACACAAAGCGGAAGCGCACCGCGGCGCCATGACAGTTCGATGTGAAGTCTGCCGGAAGTGCTTTGAAGACGATGCGGAATTAGCCGCTCATGATCGCACCCACACCGCTGACGAGCGAGCCGGGCGTTGCCGCACGTGCGGCCTCACGTTCCCGCGCTACGAGCAGCTGCGGCGCCACGCCGCATGCGCGCACGGCGCCGCCGCGCCGCCCGGCCGCCTTCCGCACGCCTGCGCGCAGTGCGGCAAGCGGTTCTCGCATGCGCACTCGCTCACGCGTCACATGCACAACCACGCAAAGCAGCTCTACCGCTGCGTCGTGTGCAAGGCCTCGTTCGCGCGAGCAGATCAGCTGGCGCAACATTTGAACAGCCACCTCGCGAACTACAAGCGTCTGAAGCCGTGA
Protein Sequence: MALCESQLDSALPQLKREESNEGGQKKTPDKKTKVEHNGEIYGLNQVPGGLPLSVDYRSPVSHFVPPELYAARQKQEPISTAETSDPPTPVKRKRGRPRVDKTSPEYLANLAARKQAKEMAAMMNNRTPESGEKRKRGRPRVDKSSPEYLARKRARELEALERKAKREYKRRATGDSAASSSAGETTPRTKRKYTKRTPSAKKDAAPSTERVKGKRGRPRKVDQLAANNKQQPQPKIRVRNNLMPVNSEPITLDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANIDKDDLYDTHLLAVNFKKPLDSQRRDDDEVLSVRSSEGCASGKEMETRVEKLEDSSNSDTDSSSSGSGSSSSGSSTSSSSDSSSSSDSSDTESESGDEKPKTEAPPPVVNHTTNDDDRSFGAWSYSGPATDSGSDSDPERAADPTAPASHDEISESENESADKSFQCHICSKWYSTRVTLKIHRRVHQNRGGGNSRSRARSSDRYECDCCSETFNRREKLWEHKAEAHRGAMTVRCEVCRKCFEDDAELAAHDRTHTADERAGRCRTCGLTFPRYEQLRRHAACAHGAAAPPGRLPHACAQCGKRFSHAHSLTRHMHNHAKQLYRCVVCKASFARADQLAQHLNSHLANYKRLKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01488072;
90% Identity: iTF_00364412;
80% Identity: -