Tmat010873.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419202.1:9816822-9820084[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.014 0.95 10.4 0.3 1 23 236 259 236 259 0.94 2 17 1.7e-05 0.0011 19.6 2.7 1 23 264 286 264 286 0.99 3 17 0.0025 0.17 12.7 1.4 1 23 316 339 316 339 0.96 4 17 0.0036 0.25 12.2 0.4 3 23 401 422 399 422 0.94 5 17 0.00043 0.03 15.1 1.0 1 23 428 451 428 451 0.93 6 17 0.0006 0.041 14.7 0.7 1 21 454 474 454 475 0.95 7 17 0.24 16 6.5 0.7 1 23 483 506 483 506 0.94 8 17 5.7 3.9e+02 2.2 0.3 1 23 511 534 511 534 0.73 9 17 0.015 1 10.3 0.4 2 23 547 568 546 568 0.95 10 17 0.0037 0.26 12.2 1.8 1 23 574 596 574 596 0.97 11 17 7.8 5.3e+02 1.7 0.2 2 9 602 609 601 618 0.86 12 17 0.016 1.1 10.2 2.4 1 23 632 654 632 654 0.95 13 17 0.009 0.62 11.0 0.3 3 23 660 680 659 680 0.94 14 17 0.0014 0.096 13.5 1.4 2 23 700 722 699 722 0.96 15 17 0.0018 0.12 13.2 2.7 1 23 728 750 728 750 0.98 16 17 0.0027 0.19 12.6 6.4 2 23 757 778 756 778 0.96 17 17 0.00012 0.0084 16.9 1.7 1 23 784 807 784 807 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAGCACAGATGAAATTCACCAGTCTAGTCAATTTAGACTGGATAAAGGAAAAGCTGCAGACTCTGTGGACATCTCCCAAGTTTTGCGGACTATGTCTGGAGAACCGAGGAAACTTCTGTTCTGTTGATATGGAACTTGTCATCAGTGACCAGGCGTTTTCTAAATGTTTGCAAGACATTCTGAACTATGTGTTTAGCGAGGATTTTGAAAACCTGATGTCAAGTTCGTATTTATGCGACAGTTGTACAGAAAAGGCAATACAATCTTACCTTTTCCTCCACAATACTAAACAACTGTCAAAAATCCTCAACAACTGTGTCACAGACATTTACTCCAAAGTAGTTGACATCAACGCTCAACTTGATGAGGTTACTTATGATACAACCAACATAATGATTGTCCTAGAAAACGACACTGAACTTTACAAAACTATCATTGACGTTAAACCTGTAACTGAAATAGTGCCAACTGAGAAGCCTATATTAATGGAAGCAATAAAGCCACCGCAAGCACCCATTATTACAGTTGCTAAGCCTGCAAAACCTATAGTAATAAAAAAGTTTGTAGAAAAACCAAAGGAAGTGAAAGTAAGAAAAGTTGTAAAACCTGATGGAACTCCAAACATTAGTCTGAAAAAAGGCCATATTGTGATAAAGCCTCTAAGCTCTCTCATGAACACCACTCCACGGTACAACACGTATGAATGTGCGGATTGCCCAGACATATTCACCACCTACAGATCACTGAAGGAACATGAGAAAGCCAAGCATAAAAAATCGGTCTACCGCTGCAATTTATGCGAAAAATCTTACAACACTCAGCAATATTTGAATATTCATTACAAGACGCATGCAAAAGCTAGATGCAAATTGTGTCAACTAATACTCCCTGAAGAGGAACTAATGGATCATTTGAGAAACCATCACGCTAACTTTGTATACACTTGCAAGTTTTGTGACTTAGTTTACTACACCCAAGAATCTTTGGACACACACTTCAAAATAAGCCATTTAGTCAATGATACTAAAACTAAATCTCAATGTATCATGTGTTTACGAAACTTTGTGGATGCGGAATTGAAGAAGCATAAGTGCAAGTTTTCTTGTTCAGAATGTTTTGTTATGCCTTGTGTTCACTACAAGTATTTAATGTCGTACAGAGAGCAAGTGCTAAACCATGGAAATAAAATAAATTGCGTAGATTGCGACTACGTGACTCGACGAAAGGAGCATCTGATAGGTCATGCTAATAGAGAGCATTTGGACCATCACCCATTCACATGCGCTGATTGTGGTCAGCAGTTTTACACCAAGTTGAGTTTAAAGACCCATATAGTACAATTCCATGAAGACTTTGTCTGTCCGCACTGTGACTTTGAATTTAAAGATATGAAAACTCTAGAAAGCCACAGAAAAGCTTGCAAACTTGTTATTCGGTCATTCTCTTGCACCCACTGTATCGCCTCATTTGACGTTCTTGAAGAGTTAAAAAACCATGAGAATTTAAGACACAATGACGAAGTTTACGCTTGCCCGCTGTGTAAAGGTAGATTCCTAACTGATTTAGAGCTGCAAGAGCACCATGCGAGGGCCCATGGGGGCATACAGTGCAAGAAAAGGCGAAAACACATTGAATGCTCTCTATGTAACATAATGTTTAAGAGTTTAAAAGAGATGCTCCAACACGAGAAGTTGCATGACCCTGAAGACATTTACCCGTGCAAAGTTTGTTCAAAGCAGTTCAAATCATTAATGAAACTGTACATTCATAATCAAAGGCACTATACCCACAGAATAAAGTGTACAGGGTGTAATAAAAAGGTTGCAGCGTCCTTCTACGCGCAACATGCCGTCAGGTGTCCATACAAAAGAGATGTTGCTTTGAGTCATGTCTGTGAAATCTGCGGTAAATCCTACCATCTGGAATCATTGCTACGTTTCCATCTAAGACTCCACATGAAGCCGGAACCATGTCCTCAATGCAACAAGACTATTAAACCCACAAGTCTTAAAAGGCATATGGAACAAGTCCACGGAGAAGTGTCAACCGAGAAACTGAAAAAAAAAGGTGTGCCTACTAAATCAACGATTGAATGTGAGTTATGCGGACATGCAGTCAGAAAGAAATGTGACTTAGAAGCTCATATGAACCGATACCATTTGAAGATCAAGCCATATGTCTGCCATATATGCAGCAAAGATTTCTGTGGTAAAGTCCGATTGAAAGAACATGTGGCAACACACACAAGCGATAATAGCTGCTTTTGTTCCATTTGTGACAAGAAGTTTGCCAACCGAGTGTGTTTAAAGATGCACTTTAGAATGCATACGGGCGAAGCGCCGTACGCCTGCGATCTTTGCGGGCAGAAATTCAGGTCATCAAGTATGATGAAAACGCACAGACTAAAAAAACATTTAGAAAAAACTGTTTGTTGTCCATTGTGTGATAGTATGTTCTTTATGGTCAGAGATATGAGACACCACTTTAAGAAGTCTCATTGGAAGTTCAAAGATGGCAGGCCGTTCGATCCGAAGGACGTTGAAGAGTTACCCGAGTCGCTCTATTATCTTTTTGAAGATGGGAGGTTACCGAAACTTACAGATGATCAATGA
- Protein Sequence
- MEEAQMKFTSLVNLDWIKEKLQTLWTSPKFCGLCLENRGNFCSVDMELVISDQAFSKCLQDILNYVFSEDFENLMSSSYLCDSCTEKAIQSYLFLHNTKQLSKILNNCVTDIYSKVVDINAQLDEVTYDTTNIMIVLENDTELYKTIIDVKPVTEIVPTEKPILMEAIKPPQAPIITVAKPAKPIVIKKFVEKPKEVKVRKVVKPDGTPNISLKKGHIVIKPLSSLMNTTPRYNTYECADCPDIFTTYRSLKEHEKAKHKKSVYRCNLCEKSYNTQQYLNIHYKTHAKARCKLCQLILPEEELMDHLRNHHANFVYTCKFCDLVYYTQESLDTHFKISHLVNDTKTKSQCIMCLRNFVDAELKKHKCKFSCSECFVMPCVHYKYLMSYREQVLNHGNKINCVDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHEDFVCPHCDFEFKDMKTLESHRKACKLVIRSFSCTHCIASFDVLEELKNHENLRHNDEVYACPLCKGRFLTDLELQEHHARAHGGIQCKKRRKHIECSLCNIMFKSLKEMLQHEKLHDPEDIYPCKVCSKQFKSLMKLYIHNQRHYTHRIKCTGCNKKVAASFYAQHAVRCPYKRDVALSHVCEICGKSYHLESLLRFHLRLHMKPEPCPQCNKTIKPTSLKRHMEQVHGEVSTEKLKKKGVPTKSTIECELCGHAVRKKCDLEAHMNRYHLKIKPYVCHICSKDFCGKVRLKEHVATHTSDNSCFCSICDKKFANRVCLKMHFRMHTGEAPYACDLCGQKFRSSSMMKTHRLKKHLEKTVCCPLCDSMFFMVRDMRHHFKKSHWKFKDGRPFDPKDVEELPESLYYLFEDGRLPKLTDDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -