Tmat010274.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419206.1:2448621-2458624[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.25 17 6.5 2.0 1 23 284 306 284 306 0.98 2 9 0.19 13 6.8 0.1 1 23 313 335 313 335 0.95 3 9 4.5e-05 0.0031 18.2 1.5 2 23 368 390 368 390 0.97 4 9 1.6e-05 0.0011 19.6 0.1 1 23 399 421 399 421 0.98 5 9 0.00017 0.011 16.4 1.3 1 23 426 448 426 448 0.98 6 9 0.012 0.82 10.6 1.4 1 21 457 477 457 482 0.94 7 9 2.3e-05 0.0016 19.1 0.6 1 23 487 510 487 510 0.98 8 9 7.4e-05 0.0051 17.5 1.6 1 23 516 538 516 538 0.98 9 9 0.00011 0.0074 17.0 0.5 2 21 548 567 548 568 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCGTTTCCATGTTTTATTTGCCACAGTACAGTGAACTCGGATACCAATGAGGAGACGCGGGAAAAATACAGAGATGTCGTCGGAATGAACCTCTGCCCAGATTCACATCTGTGTTACATTTGTTGCCATATGCTAAATAAACTATGGTTATTTAAATCTGCATGTCTGAAAAAAAGTCTAGAATATCCAGTGTTATTTAGCGAAAAAGGCACAATTAACTTACAAAGAAATGATACTGAAACAATCACAATATGTTCCGAAGAAACCTGTGTACCGAGGAATATATTACAGATATATGTTGACAACACTGACCAAAGTATACACAGCAACGATTATATAAAATTAGAAGATGATCACAATGATTTTGATGATTATTTTCGAGAAAATAGTGTTAAAGAATCTTTAGAAAAAGAAAATGATAAAATCGAAGAGTTTGTGAATAGTGATAAAGAATTTGAGAAAGGTGATGAACAATTTGTGAATGATGATGAACAATTTGTGGATAATGATGATTGTGTTGAAAATGATAAAATTCCTTCAAATGATGGAAGTGAGTTTGATTTTGAATCAAATAAAGTTGAAGATAATGATTTGGATTCTAAAATACATAGTGAAGATTCAGAAGCTAATTATGGATTTTATGAAGAAGAACGCAATGAATGTTTGGATGAAATAAGAAATGAATGTGGAAATGAAAAAGCAGCTGGAGAATCAGACACATCAAATAAGAAAAATTCAAAAAAGACTACATATAAAGATTTTGAAAAGATTCTGCTATCCACAGAAGAACAGAAGTCGGAGTTAGAAGCACAGAGGAAGAGCAAGAAGTACCTAGAAGCTGAGTTTAAATGTTATAACTGTGCTTTGGGGTTTTTGTTCAAAGATACTTATCAAACTCATATGATGAGACATGAAGAGTCAAACGGCGAATACCGTTGCATGCTCTGCTCGCTCCGCTTCGCGACGGGCGCTGTACTCCGCTCTCACGTAGCCCTCCACTCCGTACGGTATAGGTGCTCCCGTTGTTCCGAATACATTCGAGCTCGACAAACACAGACGCACGCGAAGTATTGTTACGATAAAGCGTCGGCGGCGACTTGTCATCTGTGTGGGAGGATTTTTCAGGACGCAAGCGGTTTACAACAGCATCTAAAAAGGTTTCATATGTCAAAGACTAGTAATAGAACATACTCATGCAGTGTTTGTGGAAAGAATTACAACAACCCGGCGGCTGTTCGGACTCATATGATAAAACACATCCATCGGAAATTCAGTTGCGACCAATGTCCATCTATATTCAGCAGTCCATACACCCTCACCCAACACAAGAAAAAGCACGCGGTGACGGTTGACATCAAAGAACATTACTGCGTAACATGCGACGTTGGTTATTCCAGCAGAAAGAGCCTGTTGGCGCATCAGAGACATTCCGCCAACCACCAGCAGAGGGCGTACGAGTGTCCAATCTGCAGCCGTTCCTGCCCCAACGAGAGGTCGTTAACCTCCCACATATCTACAGTCCACTCGGCAACGAAGCAATTCCGTTGTCAGATGTGCAACGCTAAGTACAGCAGTCGCAAGTCTCTGATGCGTCATGTACGGGCCCATACTGTGGCGTCGCAGGTCAAATTGGCTGTTTGTCATATTTGTGGAAATGGTTTTAAGGGCAAGAGTAAACTGAACAGGCATCTAAGAGAAGTTTGCGAAAAAGATAAACTAGAAGAGGAGCTATCGTCTTATTATGATCATCAACATGTTATGTATGGTGCCGATTCTGTAAATAAACTAAACTAA
- Protein Sequence
- MSSFPCFICHSTVNSDTNEETREKYRDVVGMNLCPDSHLCYICCHMLNKLWLFKSACLKKSLEYPVLFSEKGTINLQRNDTETITICSEETCVPRNILQIYVDNTDQSIHSNDYIKLEDDHNDFDDYFRENSVKESLEKENDKIEEFVNSDKEFEKGDEQFVNDDEQFVDNDDCVENDKIPSNDGSEFDFESNKVEDNDLDSKIHSEDSEANYGFYEEERNECLDEIRNECGNEKAAGESDTSNKKNSKKTTYKDFEKILLSTEEQKSELEAQRKSKKYLEAEFKCYNCALGFLFKDTYQTHMMRHEESNGEYRCMLCSLRFATGAVLRSHVALHSVRYRCSRCSEYIRARQTQTHAKYCYDKASAATCHLCGRIFQDASGLQQHLKRFHMSKTSNRTYSCSVCGKNYNNPAAVRTHMIKHIHRKFSCDQCPSIFSSPYTLTQHKKKHAVTVDIKEHYCVTCDVGYSSRKSLLAHQRHSANHQQRAYECPICSRSCPNERSLTSHISTVHSATKQFRCQMCNAKYSSRKSLMRHVRAHTVASQVKLAVCHICGNGFKGKSKLNRHLREVCEKDKLEEELSSYYDHQHVMYGADSVNKLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -