Basic Information

Insect: Thalpophila matura
Gene Symbol: -
Assembly: GCA_948465475.1
Location: OX419188.1:13414183-13417063[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.7e-06 0.00025 21.6 4.1 1 23 257 279 257 279 0.98

2 10 0.45 31 5.6 0.3 1 10 285 294 285 308 0.76

3 10 0.00028 0.019 15.7 1.2 1 23 318 340 318 340 0.97

4 10 0.0091 0.63 11.0 2.7 1 23 347 369 347 369 0.97

5 10 0.00013 0.0091 16.7 0.4 1 23 403 426 403 426 0.96

6 10 0.003 0.21 12.5 1.0 2 23 432 451 431 451 0.96

7 10 2.5e-06 0.00017 22.1 1.2 1 23 457 479 457 479 0.97

8 10 8.8e-05 0.0061 17.3 1.8 1 23 485 507 485 507 0.98

9 10 0.00042 0.029 15.2 2.0 1 23 513 536 513 536 0.97

10 10 0.0036 0.24 12.2 1.0 1 22 542 563 542 563 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.7e-06	0.00025	21.6	4.1	1	23	257	279	257	279	0.98
2	10	0.45	31	5.6	0.3	1	10	285	294	285	308	0.76
3	10	0.00028	0.019	15.7	1.2	1	23	318	340	318	340	0.97
4	10	0.0091	0.63	11.0	2.7	1	23	347	369	347	369	0.97
5	10	0.00013	0.0091	16.7	0.4	1	23	403	426	403	426	0.96
6	10	0.003	0.21	12.5	1.0	2	23	432	451	431	451	0.96
7	10	2.5e-06	0.00017	22.1	1.2	1	23	457	479	457	479	0.97
8	10	8.8e-05	0.0061	17.3	1.8	1	23	485	507	485	507	0.98
9	10	0.00042	0.029	15.2	2.0	1	23	513	536	513	536	0.97
10	10	0.0036	0.24	12.2	1.0	1	22	542	563	542	563	0.96

Sequence Information

Coding Sequence: ATGGCTAACGTAAAGAGTAGATTAAAAGCACCCAAAAGTGCATCTACTAAAACGAAGAAAAAAGGAATTGGTAAACCAAAAAAATCGTTGACAGGTAAACAAACCAATAAACCAAAGTTGATGAAAGATGATAAAGAGTGTGAAGTGGTCATGAAACGGCCGAGCAACCGCAAGTTCATGACACCAGATGAAAAAGTAAAATTTGTACTCAAAAATGGACATAAACTCAAAGAAAAGTTCTTTGCTAAACCACCAGTGAACGTTAAACGAAATCCTCCAAGTCGTGAGCCACCAGAAATTTACACAAATAAACATACCACTAATTTACCTCTTATGACTAAAAGTGGCCACCTTAAAAAGAAATCTAAATGCAATTTGCAACTTATTGATAGTATATTGAAGAATGAACTGATGATCCGTGAGGGGGGGAGAAATAAAAACACTAATGCTGCTGCTCATGCACCTCCCCCAATGAATCCACCTTTGTCAGTTGGTGTGAACAATAACATTGAAATAACAGACCAAAATAATACATTTGAAGACTTCTCCGATGATGGCTCTGAATATAAACTATCTGATATCTCGGCTACATCTAACGAGTCCTCCACTGAAGATGAAGATGAAGACTGTTCAGATGGCTCAATAGGGAAATCGGTTAGAAAATCTAAAAACAAAAAAAAGAAACAAAAAAATTTAGAACCATACAAAAAAAAGGCAAAACCAGAACATATCAAATTGAAAAATGGAGTAGTTTTAAGGCTAGCATACTTTGAATGTGACCTATGCAAAAAAACATTTAACAGGAAATTTTCCTTACGTAAACACATGTTTATGCATCTTGATATGAAGCCCTATAGTTGTCCTGATTGCCCTCAGAAGTTCTGGAGCCTCATTAAAAAGCAGATTCATGTAGACCGCTACCACAAGACAAGTAAAGATGATCCAAAGCTTTTTATTTGTGATTACTGTGATAAACCATTTCTTGTAAAAAAACACTTGAAAATACATTTAGCCACTCACGTAACAAATGAAAATTCATTCAAATGTATTTACTGTAACAAAGTCTTCGCCTACCATATATTGTTAATGCAGCATGAGAAAAAACATATGGTGAAAGGACGCCATGAATGTACACTGTGCAGTATGTCTTATCATTGTCGCAATCTCCTATACTTGCATGTTAAGAGCCATTTGAAAATTAAAGATTTCATTTGTCAGTATTGCGGAAAAGATTTTTTAAGGCAGATTTCCCTGACGCGGCACATTGAGATATACCATGGTGGGCATAGGATTGTGTGTCCAATATGCAATAAGAATTTGAAGGGTCATTTGACTGAGCATATGCGCACGCATGAGAAGAAGCGTCCGCATGTGTGTCCTGAGTGTGGAAAACAGTTTACACAGTCCACACAGATGAATGTCCACCGCCGCGCGCACACCGGGGCCAGGCCCTACCCTTGCCGAATATGCAAACGTCTCTTCTCGCATTCTAACGCTCTCATGCTGCATATCAGGCGTCACACAGGAGAGAAACCATTCCCCTGTGCTATGTGCCCAATGTCCTTCTCTCAATTACCACACATGAAAACGCACATGCATAAAATTCATGGTAAAGAGAACCCATACAAATGCACTAACTGTGATTCGTTTTTTAAGCTTAAATCACAACTTGATATCCATGTAAAAACATGCACAGCAGGACACACTGATCAAACGGTCAAAGGTAAAAAGAAAAAGTCAAAAAAAGGCGAGGAAGAGATAGAAGTGGATTCACCGATGTCTTTGTCTCGCATGAGGTTCCTGTTGGCCCTTCTTTTCACGATGATTGCTACCAAAGAAAAACTCAAATACTTAGGCTTCAACAAGCGGCTCGTCGATGAGATCCTTATCGAGTCGTTGGAGGCGATGAGCCAAACTCCTTGCAAGGATGAGACTCTTCAGCCGGTAAAGCGTCTCAGGAAAAACATTGAGATGTTACTAATCCGGACGGTCCCCAAACAACAGATGGAGAATTTCAAGAAACAGAATAAGTCTATTGAAGACATTCTGGAACTGTTGACGAGAGAGAGTGACAAGTAG
Protein Sequence: MANVKSRLKAPKSASTKTKKKGIGKPKKSLTGKQTNKPKLMKDDKECEVVMKRPSNRKFMTPDEKVKFVLKNGHKLKEKFFAKPPVNVKRNPPSREPPEIYTNKHTTNLPLMTKSGHLKKKSKCNLQLIDSILKNELMIREGGRNKNTNAAAHAPPPMNPPLSVGVNNNIEITDQNNTFEDFSDDGSEYKLSDISATSNESSTEDEDEDCSDGSIGKSVRKSKNKKKKQKNLEPYKKKAKPEHIKLKNGVVLRLAYFECDLCKKTFNRKFSLRKHMFMHLDMKPYSCPDCPQKFWSLIKKQIHVDRYHKTSKDDPKLFICDYCDKPFLVKKHLKIHLATHVTNENSFKCIYCNKVFAYHILLMQHEKKHMVKGRHECTLCSMSYHCRNLLYLHVKSHLKIKDFICQYCGKDFLRQISLTRHIEIYHGGHRIVCPICNKNLKGHLTEHMRTHEKKRPHVCPECGKQFTQSTQMNVHRRAHTGARPYPCRICKRLFSHSNALMLHIRRHTGEKPFPCAMCPMSFSQLPHMKTHMHKIHGKENPYKCTNCDSFFKLKSQLDIHVKTCTAGHTDQTVKGKKKKSKKGEEEIEVDSPMSLSRMRFLLALLFTMIATKEKLKYLGFNKRLVDEILIESLEAMSQTPCKDETLQPVKRLRKNIEMLLIRTVPKQQMENFKKQNKSIEDILELLTRESDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -