Tmat010331.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419206.1:3606494-3632910[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.034 2.4 9.2 0.6 1 23 241 264 241 264 0.97 2 11 0.011 0.78 10.7 0.1 1 23 271 293 271 293 0.98 3 11 1.5 1e+02 4.0 1.1 1 10 297 306 297 320 0.76 4 11 1.6 1.1e+02 3.9 3.0 1 15 327 341 327 349 0.70 5 11 5.7e-05 0.0039 17.9 0.7 2 23 354 376 353 376 0.93 6 11 2.3e-05 0.0016 19.1 1.0 1 23 382 404 382 404 0.97 7 11 0.03 2 9.3 2.9 3 21 417 435 416 440 0.93 8 11 0.00012 0.0083 16.9 1.5 1 23 448 471 448 471 0.94 9 11 0.00079 0.054 14.3 0.7 1 23 476 499 476 499 0.97 10 11 3.6e-06 0.00025 21.7 3.6 2 23 507 528 506 528 0.97 11 11 1.8e-06 0.00012 22.6 1.6 1 23 534 557 534 557 0.95
Sequence Information
- Coding Sequence
- ATGGATGTTAAAGACGAAAGTTTAGCATCTAAATTGCTCTGCAACGCATGCCTGTGCGTTGGAAGAAAGTTACATCGCTTAACAGATGAGAAAACTCAAAAATATTATTTGAATGCCTTGGACGAAATACCTCTGTTCATGGTATCTTCCGTGAGCCTGTCAGTCTGTTGGGAGTGCAAGGCCCTGCTGGAGAAGAGCATCACCTTCCGGGAACAAGTCCAGGACTCGTACAGGATACTGCAAACTTATACTCAGGAGAACCTTCACGAGTGCCTCCTAACGGATGTGAGCCGGCCGCCTCGCTTGAACATCCACTGCCCCGACCCAATCAGTATATTACCTACGGATGTATATGAATCGTTCCTCGAAGTGCCCATCATTTGTGTCAAAGATGAGCTCAAAGACGACTGGGATAAAGATGACACTAACAATCCGGAAGACAATGATCCACTTACAGACAGTTCAGAGAACACAAAGCAGTTTGAGACGGAGCTCCAAAGTATAATGTGCTCCATCAAACGAGACGAGAAGAGAAAGAGACATGGCAAAACTAAGGTTAAAAGAGCTAAGAAGGTTAAGCATCTCAAAGAGGAGGAAATCTCTAAGCCGAAACCAATGAAAGAGCAGGACCAAAAAATACTCACGATAGAGTTGACATACGAAGAGATGTTGTTAGAAAGAGAGAGGGAATCTACGAGAGATGTGTATGTCAAGTCTGAGTATAAGTGCGAGAGCTGCCTCATCGGGTTTAACTATAAGAAGTCTTATTTGGCGCATGTTGCGACGAAGCATGCGGCGGATCTCGGTGAATACATCTGCCCGATTTGCAAAACAATCATTCCATCAGTGGAGTCTTTCACAGCTCATTACAAAAGACATATGAGAAGGTATGAATGCAGTATATGTCACAAGCGAACCCTGGATATGAAGGTGATGCAGCAACACTACTTCTCCACGCACGAAATATCGCTCAAGGATTACAAGTGTAATGTATGCGGGAAGATCTCTCATTCCATAGACACACACCGCTACCATAAAGACACGCATAAAGCGAGAGTGCAATGCTCAGAGTGTGAGAAAACCTTCAGACATCGAGCGGGACTCATGAACCATAGACTCGCAGTCCATGAATACCACAACGCGTTTCCTTGCACAGTGTGCGATAAGGTGTTTAGATGGAAAACTAGTCTTAAAAGACATCTAGAGAAGCATGAAGTGAAGGGTAAGTCGTCATCAGCGGCCGCGTACTGCTACATGTGTAACGTGAGCTTCTCTTCCATATGCTCCTACCAGCGCCACATGAAGAACAGCCTCAAGCACGTCACGCAGGACCAGCTCAAATTCATATGCGACCACTGCGAGAGGCGGTTCGCTGACAAGACGAAGTTAAGAGACCATATTGAGGAGAAACATTTGCACAAGACCTATCAATGCCATATCTGTCTTAAGCCCTCGAAAAACCGCGTGGGTCTAGACCAGCACATCCGCAACGTACACAAAGGAAGACCCAACAATAAGATGTGCCATCACTGCGGCAAGGGATTCCCAACTAAGTTGCAGCTGGAGTCACACATACGTACGCACACTGGCGAAAGACCATTCATATGTAACTACTGTCCTACCACGTTCTCACAGCAATCCAACTTATACAAACATAACAGACAGGTACATCTCAATATAAAATCAAAACGCTATCCTACATGCAAGAGGAAAGAGGACAAACCTCCGGACGTACCCATATTAGACCATACACCACCCATAGACCCATATAGACCGGTAGCCATGTTGCACTATTCTACTGAGAAAGGTTTCGTCATGTAA
- Protein Sequence
- MDVKDESLASKLLCNACLCVGRKLHRLTDEKTQKYYLNALDEIPLFMVSSVSLSVCWECKALLEKSITFREQVQDSYRILQTYTQENLHECLLTDVSRPPRLNIHCPDPISILPTDVYESFLEVPIICVKDELKDDWDKDDTNNPEDNDPLTDSSENTKQFETELQSIMCSIKRDEKRKRHGKTKVKRAKKVKHLKEEEISKPKPMKEQDQKILTIELTYEEMLLERERESTRDVYVKSEYKCESCLIGFNYKKSYLAHVATKHAADLGEYICPICKTIIPSVESFTAHYKRHMRRYECSICHKRTLDMKVMQQHYFSTHEISLKDYKCNVCGKISHSIDTHRYHKDTHKARVQCSECEKTFRHRAGLMNHRLAVHEYHNAFPCTVCDKVFRWKTSLKRHLEKHEVKGKSSSAAAYCYMCNVSFSSICSYQRHMKNSLKHVTQDQLKFICDHCERRFADKTKLRDHIEEKHLHKTYQCHICLKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTKLQLESHIRTHTGERPFICNYCPTTFSQQSNLYKHNRQVHLNIKSKRYPTCKRKEDKPPDVPILDHTPPIDPYRPVAMLHYSTEKGFVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00177450;
- 90% Identity
- -
- 80% Identity
- -