Tmat015539.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419189.1:7466729-7479047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00042 0.029 15.2 0.2 2 23 156 177 155 177 0.93 2 10 0.00061 0.042 14.7 2.4 1 23 183 205 183 205 0.96 3 10 7e-05 0.0048 17.6 0.3 1 23 297 319 297 319 0.98 4 10 0.00064 0.044 14.6 0.0 3 23 424 445 422 445 0.90 5 10 0.0011 0.076 13.8 0.0 1 23 460 482 460 482 0.93 6 10 1.5e-05 0.001 19.7 0.2 1 23 514 536 514 536 0.98 7 10 0.00065 0.045 14.6 0.2 1 23 542 564 542 564 0.97 8 10 0.00037 0.025 15.3 0.3 1 23 570 592 570 593 0.95 9 10 0.0099 0.68 10.8 1.1 1 23 606 628 606 628 0.96 10 10 0.04 2.8 8.9 0.0 1 20 776 795 776 798 0.93
Sequence Information
- Coding Sequence
- ATGGATGGGGAAGCAGAAGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGAAAATGTTTGCTTTCCAGCACAGTGCAGGTGTAGTGGAGACAGAAGTGATATCAGGCCTAGATAACGTGCAGCATACAGGATATACCATGTTGAAGGTTGAAAATCAAATGTATACCCAGACATCTGAGGAGATGATGACCACGGACCAAATGGCTGCAGAAAACTTAATGTTTTTGTCTCAAGATGTAGTAAGCTATACAGAGACAGCTGAACTAGCTGATGATCCCAGTGTGGAGTGTGTCACGGAAGAAGTCATTACTGATGATTGGGTGATTCCTGGTGGGCAGGAAAGAGTGGAAGTCCCTATGGATCATCTGAATCACCCTGATTTAGTTCTGAAGGAAGAAAATGACCTTGATGTGCCTTTACCAACGGATCAAGACGAATACACGGCGATGCGGCCTTGGCCATGCGACTTCTGTTCGCGGCGGTTCCGTAAGAAGGCGGCTCTCATGAACCACATGGTGGCCCATCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGTGTGCGGTACGTTCGCAAGTGCGATCTCATGAACCATCTCAAAGTTCACGCTTTTGTGCCAGACAACCCGGATTCCATAGACTATGAGGATGTCTTAGACAATAACCAAATTGTAAAACCAAAGAAGAAACGAGGTCGGCGGAAAAAGAATCCTGAACCAGTGGAGGAGAACGGCATGTGGGAGAACATGACGTCGGCTCGCACGCAGCAGTGGTCGCGGCGGGCGCGCTCGCCGGCCAGGCCGCCGCCCACGCCGCCCTCGCCGCCCTCCGAGCCGCCCCCGCCCTCGCCGCCGCCCCCGCCCAGCGACCCCTCGCGACCCTTCGTCTGCAGACACTGCGGCGTCGGCTTCGCCAGGGAGAAGGCCTTGCAGTCGCACGCCAGGGTGCACGGCGGCGACTCGCCGGTGGAGTGCGTGTCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGGCGTGTGTGCACGGCGGCGACTCGCCGGTGGAGTGCGTGTCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGGCGCACGCGCAGCAGCGCCACCCGCACCTGCCGCCGCGCCCAGACCACCCCGACCCGCCCTACGATGAGTCCGACTCCGGCGACGACATGGAGTTCCGTCTGTCGCCGCTGTCGCACGGCGGCGGCGAGCGCGCCGTGTACGACACGATGCGCGGGCCCGAGCTGTTCTGCCAGGACTGCGGCGTCGCCTTCCAGCGCGCCGACCTGCTGCGGCGACACGTGGCCGCCGCGCACAGTTACAAGCGGCACGACAGCTCCAGTAGCACGTGGGCCGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTCGCGCACGCCGAGGGCCACGCCGAGCGACACCGCACGCCGCACACCGCGCCCAGATTAAAAAAAATGTCTAGAGGTCGAAATAATACGTCATCATCGAATAGTTCACGGCAATTCCCCTGTAGGGTATGTGGCAAGGTGTTTGGTTCGAGGAGTTCCCAGCAGATTCACATCCGAATCCACACGGGCGAGCGGCCGTACGCGTGTCGGTTCTGCTGGAAAGCATTCGCCGACGGCGGCACGCTGCGGAAACATGAACGAATACATACAGGCGAGAAGCCGTACGCATGCGCGGTGTGTCCGCGCGCCTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGTGGCCCCGCTTACTGTTGTGTTGTGTGCGGTCGTACGCTGCACTCCAGCGCGGAGCTGGTGCAGCACCTGATACAACACTGTGACGCCAACACGGCGCTTAAGAGACAACCCCAGACGGGACCGCGGAAGTACAAGAGACGGCGAAAACTGAAGACGGAGCAGTCCCCCGCGACGCCGCGCGACTGGGAGCGCGCCTCGCCGTCGCCGCCGCCCGCGTCGCGGTCGCCGTCGCCCGCGTCGCGCGGCTCGGACGCGCCGCCCGCGTCGCCCGCGCCGCCCGCCTCGCCGCCGTCGCCCGCGCGCCGCCGCCGCCGCCGCGCCGCCTCGCCCGCGCCCCGCCCGCGCATGATCCACACGGAGGAGGCGCGCGCGGGGCGGCGGGGCCGCGCGGCCGCGCGCTCGCCGCCGCGCGCCCGCCCCGCGCGCGCCCGCCGCCCGCCGCGCCGCCCCGCCGACGACCTGCGCGCCATCGCGCCGCGCGCGCCGTCCGCCGAGCCGGCGCCGGCCGCGGGCGCGCCCTTCAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGCTGCTGCACGTGCCCGTGCACATCTGA
- Protein Sequence
- MDGEAEDFNLQWEEEVEVKKMFAFQHSAGVVETEVISGLDNVQHTGYTMLKVENQMYTQTSEEMMTTDQMAAENLMFLSQDVVSYTETAELADDPSVECVTEEVITDDWVIPGGQERVEVPMDHLNHPDLVLKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNPDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRARSPARPPPTPPSPPSEPPPPSPPPPPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECVSCGELCWSREALAACVHGGDSPVECVSCGELCWSREALAAHAQQRHPHLPPRPDHPDPPYDESDSGDDMEFRLSPLSHGGGERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFTDALQLLAHAEGHAERHRTPHTAPRLKKMSRGRNNTSSSNSSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTEQSPATPRDWERASPSPPPASRSPSPASRGSDAPPASPAPPASPPSPARRRRRRAASPAPRPRMIHTEEARAGRRGRAAARSPPRARPARARRPPRRPADDLRAIAPRAPSAEPAPAAGAPFKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064911;
- 90% Identity
- -
- 80% Identity
- -