Tmat020008.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419190.1:13612237-13618083[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0007 0.048 14.5 2.7 1 23 128 150 128 150 0.96 2 13 0.0051 0.35 11.8 0.3 2 23 156 177 155 177 0.95 3 13 0.077 5.3 8.0 0.1 2 23 181 202 181 202 0.93 4 13 1.3e-05 0.00086 20.0 2.8 2 23 220 241 219 241 0.97 5 13 1.5e-05 0.001 19.7 1.3 1 23 250 272 250 272 0.96 6 13 5.4e-05 0.0037 18.0 3.4 1 23 278 300 278 300 0.97 7 13 8.7e-06 0.0006 20.5 4.1 1 23 306 328 306 328 0.99 8 13 2.6e-08 1.8e-06 28.4 1.0 1 23 334 356 334 356 0.95 9 13 1.3e-05 0.00088 19.9 2.6 1 23 362 384 362 384 0.98 10 13 4.2e-06 0.00029 21.5 0.5 1 23 390 412 390 412 0.98 11 13 0.0029 0.2 12.5 6.4 1 23 418 440 418 440 0.97 12 13 4.4e-07 3e-05 24.5 2.1 1 23 446 468 446 468 0.98 13 13 0.00088 0.06 14.2 0.4 1 20 474 493 474 496 0.94
Sequence Information
- Coding Sequence
- ATGTTAGACATAACTACGTCGTGCCGGACTTGTATGAAAGAGAATGTGACTTTGGTGGATATCTATGAAATAGTTGAAATTGAGGAAAATTGTCTTCAATTGGCTGAGTTGCTTGTGCAGTGTACTCCAACAGAGGTCTCTAAAGAGGATGGGTTACCTCAACACCTCTGTGATGCTTGTGTCAAAGTGCTGCAAGTGGCCTACACATTCCGGCAGCAGGCGGCGAAGGCACACGATGAATTTAGAAAACTCCTACAAAGTAATGTAAAAACAGAACCACAAGAAGTTGCCCTCAAAGCTGAAAATGATCATGATTATTATTCAAATAATCAAGACTTCAGTTTTGACACCAACTTTTCAAAAACTGAACTTGAAGAAGAATATGAATGTACTAAATGCAATAAACAGTTTACAAAAGAGAAAAAATATTTAAAACATTTAGAAGCACATGATAGTGTATCATTAGAATGCACCATTTGTAACAAGTTGTATCCCAACCAGCTTTTGTTGAACAAACACAGCGCCAAGCATGCTAAGAATGTTTGTATGATTTGTAATATCAATTTTGCGAGAGACACCGAGTTACTTGAACATCTTGTACAACATACTGATAAGATTCAAGTAAAAACCGAAAATGAGGTGCCAGTACAAATTTTACAATGCACGGATTGTAAGTTAACATTTACAAAGCAAAGATCACTGTCTATGCACATGAGAAAACATAGAAATAAAAATGAGAAAAAGGAATTCATTTGTGATATGTGTGGAAAGAACTTTGCTATGAAACATTTGTTGAAGCGGCATTTGGTGATGCATAGCGAAGTTAAACCACACAAGTGTGCAAAATGTTCCAAGACATATGCCAGACGGGACCAGCTAATGTCTCACATGTACTCTCATAAAGAACACAAGCCATACGTTTGTACGTACTGCAAGAAAAGTTTTGCCCAAATGTGCAGTCTAAAGGACCACCTCCGTACCCACACAGGAGAGACCCCATTCCTATGTTCTGAGTGCGGCAAGGGTTTCTCCAATAATTCCAACCTCAGGCAGCATATGATGAGGCATTCAGGAGTCAAGCCGTATGCCTGTAACTTGTGCCCTAAGACATTTTGTACTAAAGGTCAGATGACGTCGCACCTGTCCACGCACACAGGCGAACACCCATACAAATGCGAGGAGTGTGGCGCCGCCTTCACCAAGCAGAACTCTCTGAAGAAGCACTCCATGATACACCTCGCTGTGAGGCCGTTTGCTTGCGAAACTTGCAACATGAGGTTCACATGCAAAGACCACCTGAAGCGCCACACCAGGATACACACGGGCGAGAAGCCCTACAAGTGCAAGTACTGTGACCGCGCGTTCTCACAGAGCAACGACTTGGTGAAGCATACGCGACAGCACATCGGACAGAACACGTACCAATGCACAATATGCGGCTCCCGGTTCCGCCTGCTATCAGAATTGAAGCTGCACTACCCAGTCCACTTTGCGAACGGCAAAGACGACTCCAATGATCCTCAGATTAGTACCAAAGAACCTATCACGGAGCCACTTAACGGCGAATGTTCTAAAGAACTCCCTATGTTAGAACTTAAGCCACCAGAATTTAACCTTTTGACCTTTAAAAATGATAAAGACCTCCCACTTTTGTTAAAGCCGCCGGAGGTTGATAAGGATCTTTCAATGTTGGGTCTCAAACCTCCAAATAACGATGATAACGATCCCGTGCATATAGATCCTAATAGAATCGTTATTACTATTAACCATTGTGAGACGAACGGTGTTGTCAATGGGATCACTATTAAATTACCGTCTAAAGAGAGCTAA
- Protein Sequence
- MLDITTSCRTCMKENVTLVDIYEIVEIEENCLQLAELLVQCTPTEVSKEDGLPQHLCDACVKVLQVAYTFRQQAAKAHDEFRKLLQSNVKTEPQEVALKAENDHDYYSNNQDFSFDTNFSKTELEEEYECTKCNKQFTKEKKYLKHLEAHDSVSLECTICNKLYPNQLLLNKHSAKHAKNVCMICNINFARDTELLEHLVQHTDKIQVKTENEVPVQILQCTDCKLTFTKQRSLSMHMRKHRNKNEKKEFICDMCGKNFAMKHLLKRHLVMHSEVKPHKCAKCSKTYARRDQLMSHMYSHKEHKPYVCTYCKKSFAQMCSLKDHLRTHTGETPFLCSECGKGFSNNSNLRQHMMRHSGVKPYACNLCPKTFCTKGQMTSHLSTHTGEHPYKCEECGAAFTKQNSLKKHSMIHLAVRPFACETCNMRFTCKDHLKRHTRIHTGEKPYKCKYCDRAFSQSNDLVKHTRQHIGQNTYQCTICGSRFRLLSELKLHYPVHFANGKDDSNDPQISTKEPITEPLNGECSKELPMLELKPPEFNLLTFKNDKDLPLLLKPPEVDKDLSMLGLKPPNNDDNDPVHIDPNRIVITINHCETNGVVNGITIKLPSKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00623390;
- 90% Identity
- -
- 80% Identity
- -