Tmat000283.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419203.1:4400785-4410122[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 9.9e-05 0.0068 17.1 0.6 2 23 16 37 15 37 0.96 2 22 0.95 65 4.6 2.5 1 23 84 106 84 106 0.97 3 22 0.031 2.1 9.3 0.3 2 23 134 156 133 157 0.91 4 22 8.9e-05 0.0061 17.3 0.5 2 23 177 199 176 199 0.96 5 22 0.00025 0.017 15.9 1.8 1 23 204 226 204 227 0.93 6 22 0.0002 0.014 16.2 1.1 1 23 231 254 231 254 0.95 7 22 0.05 3.4 8.6 0.9 2 23 257 279 256 279 0.95 8 22 0.18 12 6.9 0.3 2 20 285 303 285 305 0.92 9 22 0.064 4.4 8.3 2.2 1 23 352 375 352 375 0.90 10 22 0.0012 0.084 13.7 0.0 1 23 448 471 448 471 0.95 11 22 7.5e-05 0.0052 17.5 0.9 1 23 476 499 476 499 0.94 12 22 6.8e-05 0.0047 17.6 0.8 1 22 505 526 505 528 0.91 13 22 0.048 3.3 8.7 0.6 1 23 574 597 574 597 0.94 14 22 0.015 1 10.3 0.3 3 23 629 650 627 650 0.94 15 22 0.0091 0.63 11.0 2.3 2 23 673 694 673 695 0.95 16 22 0.0007 0.048 14.5 1.7 1 23 700 723 700 723 0.97 17 22 0.043 2.9 8.9 0.2 1 23 728 751 728 751 0.93 18 22 0.0014 0.095 13.5 0.7 2 23 757 779 756 779 0.93 19 22 0.00021 0.014 16.1 0.1 2 23 787 809 786 809 0.97 20 22 0.15 10 7.2 0.0 2 23 816 837 815 837 0.95 21 22 3.1e-06 0.00022 21.9 1.0 1 23 843 865 843 865 0.91 22 22 2.5e-06 0.00017 22.2 1.1 1 23 871 894 871 894 0.97
Sequence Information
- Coding Sequence
- ATGAAAGAACACGTGAGGAGAACACATTTGAAAGAAAAGAATATAGAATGTTCCATTTGCAATATGAAGTTCTTCAACAACGTTCTTCTTAGAAGGCACATGGTGAAACATAGCAGGGAGAAGAATTTTAACTGCGATGTTTATTTGGAAACAGAGGTGACAAAGCTCAGTGCTAGTTATCTCAGGAGGCGAAATCTGCAAATATTACTCAACAATACATCATTAATACCTTTTAAATGGCGAGGCAAATACATGTGCTTTTATTGTGGGGACGATTTGAACACACACGAACGTCTCCGGAAACACACGAAAGGCCACGGACGTTGTACCGATAAAGACAGGGCTATACGACTTGTTAAATCAGCAGAAATAGAAATCAAAATTGACGTTTCCGATATAACTTGCGAGATTTGTACAGAAACTTTTCCTTATTTAGACGACATTATCAACCATTTGATATTTAAACACCATCTGCCGTATGATAAAGATGTAGAAACTATGATATCGGCGTACAGGCTTACAGATCTTCAATGTCTCCTTTGCGATAAAAGTTTTAATTACTTGCGTAAACTAATCACTCATATGAATATAGAGCATCCCAATAACTGCTTTCTGTGTCCCGAATGCAAACAAAAGTTTAATAAGAAGAGGGATTTAGATGCTCACGTTAGAATTCACCATAAGAAATGTTATTCTTGTCTTAAATGCGACCAGACGTTTCCGTCGCATTCCGCTCTACAGATTCATAGATCGAACGCTCATGCTTCTACGTGTAACATCTGTTTCCAAATATTTTCGTCTGAAAGCAAAAGGTTATCCCACTTGAAATTGGAACATGAATCTGATTCAAACGAATGTGGGTTCTGCAATAAAATCTTAACAACGAAACAGGCGTTCTTAAGACATGCCTCAAAATGTAAACCGAATGCTAAGGAAGAAACTATAATTGTTAATGACGAGGACAAAAAGATATCCGTAAAAGAAATAAGGAAGAGTTTAGCATATATATTTAACATGACTACTGCCCTTCCTTTCAAATTCTACATGAATAGGTTCCGTTGTTTCTATTGCGCAAAAGACTTCACCTTATGCGAGGACTTAAAAGAACATACAGTGTTGGAACATCCTCACTGCGATATATCCTTTAAATCTATGAAATTAAGGAACAGATACGACGGTGTTCAAATCAAAATCGATACGTCTTCACTATCTTGTAGGTTATGCCTCGTGTCATTGCAAGATTTGAACGATTTGATCGACCATTTGAGCAAAGAACACAAGGCCAAATGCCATACGTCGGTTGAGAGTAATATGCAGTCGTTCAAATTGATCAAGGACAACTACCCTTGCCCCATCTGCGGGGAAGTGTACAGATATTTCGGAGTCTTACTTAAGCACGTTAGCTCTGACCATAATGACAATAAACATATCTGCATGTACTGCGGCAAAGCATTCAGAACGGATCCAAATCTTAGAGCGCACGTGTCGAGGCGGCATAAAACGGCAGACAAATATAAGTGCAGCAATTGTGATCTGTTTTTCAGAACGAAAAATGCGTTAAGAAACCATCAAGGCGGCGTTCACGGTTCAAAATTCAATACTGTGGAGGACAAATATAAGAAAATGGAGGTCGCCCGTAAGCTATTGATAAAGCGACGAAATGTCGAATATGTGTTACAGTATAGCAATGTTACTCCCTTCATGTGGCATAAAGGCAAATACAAATGCTTTTACTGCAACGAAACTACGAAAGACCCTGTCATACTCCGAGATCACACGAACGAAACACACCAATTCGCGAACCTAGAACTCGTTGTGTTCGACAGAACCAAAAATAACAGGAATAAGGACGCTGCAGTCAAAATTGATGTCACAGGCGTATGCTGCAAGCTTTGTCCTCAAGCTGTGACTAATTTAGAAGAGCTGATCCACCATCTGATCATCGCACATGACGCGGAATACGATGTCAGTGTACCAAACTGTCTGCTACCCTTCAAATTAGATAAGGACCAGCCAACATGCCCGACTTGTAATATGAAATTCGTGTTCTTCGAATATTTACTGCGACACGCGAATAAACATCACCTTTCCCACCATTATATTTGTGACGTATGCGGCACCAGTTTCCAAGGAGAAAACCATTTGAAAATGCATTATAGATACTACCATAGAGAGGGTGGTTACACTTGCGAATACTGTGGCATAAGTCTTGCTACTCTATCCAAAAAGATTTTACACGAGAAAAACGTGCATTTAGTTAATCTATCCACTTGCCCGCATTGTCCAGAAACCTTCAAAAGTCCGTATTTGAAGAAGCTACATTTGGCAAACGTTCATGGGGTCGAAGAACTAAAAATTAAGTGTCCATATTGCCCTAAAGTGTACCCCCAAGAATCTATAATGTCGCGTCATATGAGAAGGGTGCATTTAAGAGAGAAAAACGTCGAATGCGAAGTCTGTGGCGACAAATTCTTTGGTCCTTACGACGTGAAATTGCACATGGTCAAACATAATGGGGATAAGAAATTCGTTTGCTCCATTTGTGGCAAGAAATTTTCCAAGCGAAGTAATTTGAACTCCCATTCTGTACTGCATACTAGAGAAAAGGACTATGTATGCGCGGTTTGCAATAAGGCTTTTGCGCATCAGACGAATTTGAGAATGCATATTCGTAATAGACACAGCCAGTTCGATTCGGCCCCTATTGTTGGTGAAATTGATGAAAGCGAAATGGTTCAAATGGAGATAATTCAGGAGGAGTTGGAAGGAGAAGTCGCAGGACAATATATTCAATGA
- Protein Sequence
- MKEHVRRTHLKEKNIECSICNMKFFNNVLLRRHMVKHSREKNFNCDVYLETEVTKLSASYLRRRNLQILLNNTSLIPFKWRGKYMCFYCGDDLNTHERLRKHTKGHGRCTDKDRAIRLVKSAEIEIKIDVSDITCEICTETFPYLDDIINHLIFKHHLPYDKDVETMISAYRLTDLQCLLCDKSFNYLRKLITHMNIEHPNNCFLCPECKQKFNKKRDLDAHVRIHHKKCYSCLKCDQTFPSHSALQIHRSNAHASTCNICFQIFSSESKRLSHLKLEHESDSNECGFCNKILTTKQAFLRHASKCKPNAKEETIIVNDEDKKISVKEIRKSLAYIFNMTTALPFKFYMNRFRCFYCAKDFTLCEDLKEHTVLEHPHCDISFKSMKLRNRYDGVQIKIDTSSLSCRLCLVSLQDLNDLIDHLSKEHKAKCHTSVESNMQSFKLIKDNYPCPICGEVYRYFGVLLKHVSSDHNDNKHICMYCGKAFRTDPNLRAHVSRRHKTADKYKCSNCDLFFRTKNALRNHQGGVHGSKFNTVEDKYKKMEVARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPVILRDHTNETHQFANLELVVFDRTKNNRNKDAAVKIDVTGVCCKLCPQAVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCSICGKKFSKRSNLNSHSVLHTREKDYVCAVCNKAFAHQTNLRMHIRNRHSQFDSAPIVGEIDESEMVQMEIIQEELEGEVAGQYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -