Tmat008634.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419192.1:9747943-9750667[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-07 8.7e-05 22.5 0.0 1 38 16 54 16 57 0.92 2 2 1.2 5.1e+02 0.8 0.2 25 40 398 413 397 416 0.85
Sequence Information
- Coding Sequence
- ATGCCACGTAAATATACCAGAACCTCTTCGCGGGCCACTTCTTATACTAAAGAAGCGCTGCAATTAGCCATGCAGAGAATAAATAATAAGGAGCTCACTTATTTAGCTGCTTCAAAATTGTATGGTATTCCTACATCCACACTAAGTGATAGAATCCTAAAGAAAACAGCAATAGACAAATATGACCCAGCAGCTTATGCGCGATGGCAAAAACACATGGCTTCAGTGACTTTCAAAAAACAGAAAACTTTAGCACAGATATGTATAGATGAAATTAATAAGATCATGTCCTATAACAGCTCTACAAAACTACTCGCCAGTTTCGAACAAATACTTCTAGAAAAAGTTTCGCAACATCCTCAAAACTCCAAGAACAATATGGCTATTAAGTTAAAACGAGTCGCAAAAGGTGCAGAAGTGATAACAAAATATTTTCTAGAAAAACAGCATGCGATAGAATTAACAAATGAAATACAAAATACAACAAAACGGAAACAAAGAACAGTACTTGAATCAAAAAATTATGCATTTGATCCTATACCAGGACCATCTGGAATTCAAGATAAAGGCTTAAGATCAGAAGCAACCGTAAATGTATCGATTTTAACTAACAAGAACAACACTGACATGTATATTTCTAAAAAAGGCAAAGGAGTTGGAAAAAAAACGCGAACTGACAAAGAAAATGATTTAAAAGTGTACAAGCATGATAAAAACAGAAAGAAAATTAAAGGAATACATGACATGGATAATATTCAAGAGAGAATAGCTAGTCCAAAGGACGATAACTGCGAAGAGTCATGCGAGATAGAAGAAATTCCAGAAATTCATATGAGTAAGACAAACGTTACGGCAAATGATAATAACAAAGTGACTATCTTGTCGTCTGTGAAAATCACACCAGATAATAAAGCTTTCTATAAAATTTTACCAGAAAGTTTACAATTAAAGCCAAATGATAAAGTTTTACAATTAAAGCCAAATGATAAAGATTTCGATTTGTTTACAAATCAAAAGCGGAAGCGATCACAAAGTACAAGCGTATGCAATATACCAAAGAAACGAACGAAGAAAGTTAATTGCCCTACAAAAACAACGACAAAAGATCAAAATTATTTCAGTGGAAACTTTTATATCAACACTGATAAAGATGATGACGGTGGGACCAAAAATTATATTGATGATTTGAAGACGTACAATATTGGGGATACAGTTCTCGTTAGATATTTTAAACGAACTTGGACATACTACGTCGGTATCATTGAAAATAATAATATCAACTCAAACCCAAATATGTACCAGATAACATTCTATAAAACTGTTGGCAAGAAAAACAACCTAAAATTTGTTATTCCTAAGCGTAAAGATCAAGACTATGTACCTGATTCTAATATAGCTAAAGTGATAGAACTACTACAGATAAATGAAGACCCTGTTGAGTATACCCTTATGAATGACGATGATGAGAATTTCTTTTAA
- Protein Sequence
- MPRKYTRTSSRATSYTKEALQLAMQRINNKELTYLAASKLYGIPTSTLSDRILKKTAIDKYDPAAYARWQKHMASVTFKKQKTLAQICIDEINKIMSYNSSTKLLASFEQILLEKVSQHPQNSKNNMAIKLKRVAKGAEVITKYFLEKQHAIELTNEIQNTTKRKQRTVLESKNYAFDPIPGPSGIQDKGLRSEATVNVSILTNKNNTDMYISKKGKGVGKKTRTDKENDLKVYKHDKNRKKIKGIHDMDNIQERIASPKDDNCEESCEIEEIPEIHMSKTNVTANDNNKVTILSSVKITPDNKAFYKILPESLQLKPNDKVLQLKPNDKDFDLFTNQKRKRSQSTSVCNIPKKRTKKVNCPTKTTTKDQNYFSGNFYINTDKDDDGGTKNYIDDLKTYNIGDTVLVRYFKRTWTYYVGIIENNNINSNPNMYQITFYKTVGKKNNLKFVIPKRKDQDYVPDSNIAKVIELLQINEDPVEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -