Tmat014684.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419186.1:15045086-15045493[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-10 8.6e-08 32.1 0.1 1 44 11 54 11 55 0.90 2 2 5.3 2.2e+03 -1.2 0.0 33 44 118 129 118 130 0.81
Sequence Information
- Coding Sequence
- ATGATATTACCTTCAAGAAGAGCTACGTGGACAGAAGAAACCTTGCGAGAGGCAATGCAAGCAATAATTCGGGACAAAGTGACACGACGCGCTGCAGCAAATATTTACGGCATTCCTAGACAAACATTAGCTGATCACTTGGCAAAAAGAAGCTTCGTGAAGAGAATAGGAAGAAAATCAATCATGAACGCAGAACAAGAAGCTTTCCTTGTGAGCAGATTAATAAAAATTTCTAATAGCGGAGCGCCAGTCACCCCACATGTGATTTGCAGGCAAGCGTTTATATTTTGTGAAAAATTTAAAATTAAACACAATTTTAACATCGAATCCAGGCTTGCGGGCAAGAAATGGCTCAACAGGTTTCTGAAACGGCATCCCGAGGTTTTGAATTGTACAAGCACACCTTGA
- Protein Sequence
- MILPSRRATWTEETLREAMQAIIRDKVTRRAAANIYGIPRQTLADHLAKRSFVKRIGRKSIMNAEQEAFLVSRLIKISNSGAPVTPHVICRQAFIFCEKFKIKHNFNIESRLAGKKWLNRFLKRHPEVLNCTSTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -