Tmat000267.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419203.1:4208378-4209457[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-10 5.5e-08 32.7 0.0 1 41 19 59 19 63 0.95
Sequence Information
- Coding Sequence
- ATGCACCGTAATATGGTTCAAAATCATAGATGGAAAGCAGAAGGCACATTTTGGACAGAAGAAACCTTATTTAAAGCTGTTGAGGCTGTCAAAAACAAAGAAATATCGGGTTACGGAGCCGCCATAAAATATAACATCCCCCGGACAACTATCATGAACTACGTCAATGGTCGCTATGTAACTTGTCGCAGAGGGAAGAAATCTTTAACAAATGGAAGACCAACAGTGCTGTCATCGAACACTGAAAAGCGACCGGCACAAGATTTACTTAAGGATCAAACAAAAGCAGTCATCTCAAACGTGTACCATTACGTTGAGCAAGAGTACGTAGAATTAAAGAAGATCTACAAGGATCTGGACCTGACCCCTCTGTCGAGGTGTGCCAAACGGACGGCCTTAGCCACCGGCGTCAGCGAGACGACGGTCCTGCAGATACTGGATGAGGAAAAGCAAGGGAATGCTGCCAACAGAGAGGAACCGCGTCAGAAGCGAGGCAGGGTTTCAGAAAAACCTGAAGAGGCAGAACCGTATGTGTAA
- Protein Sequence
- MHRNMVQNHRWKAEGTFWTEETLFKAVEAVKNKEISGYGAAIKYNIPRTTIMNYVNGRYVTCRRGKKSLTNGRPTVLSSNTEKRPAQDLLKDQTKAVISNVYHYVEQEYVELKKIYKDLDLTPLSRCAKRTALATGVSETTVLQILDEEKQGNAANREEPRQKRGRVSEKPEEAEPYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -