Tmat000400.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419203.1:5637767-5638159[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-14 8.4e-12 45.0 0.0 2 38 16 53 15 58 0.90
Sequence Information
- Coding Sequence
- ATGGTACGAAATTATAAACGTAAAACAGATCGTGGAACATGGGAAGAAGACGATATGAGAAGAGCGGTTAGAGCTGTGCTTTCTGGGACAATGGGATTTCTTCGAGCCTCAGCTACATATAACGTCCCTAAATCGACCTTGGAACGACGAGTGAAAAAGGCTCGATGTACTCAAGATGCTGTCACTGATTCAGATAATGACTATGGGAAAAAGAAATTAGGACGCTACAAAACAGTTTTTAATAAAGAACAGGAAGAATTATCTCTCATTATATCCATGGAAGCGCGCCTTTTCGGAATAACTGGCAAAGAGCTTCGGATTTTAGCTTTCCAGTTAGCTGTTTGCAGCAGTTGCTTGCAGTTAGTTAAAATGTTTACTCATCATGCCCCATAG
- Protein Sequence
- MVRNYKRKTDRGTWEEDDMRRAVRAVLSGTMGFLRASATYNVPKSTLERRVKKARCTQDAVTDSDNDYGKKKLGRYKTVFNKEQEELSLIISMEARLFGITGKELRILAFQLAVCSSCLQLVKMFTHHAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207819;
- 90% Identity
- -
- 80% Identity
- -