Tmat014661.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419186.1:14575446-14582775[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-15 2.5e-12 46.6 0.1 1 39 122 160 122 166 0.88 2 2 7.3 3.1e+03 -1.7 0.0 23 31 208 216 208 216 0.85
Sequence Information
- Coding Sequence
- ATGCGGCGTCACTTGGAAGCAAAACATGGCATAAAACAAGAAACAATCAAGAGACGTGTAGCTGTGAATAAAATTAAAGGAATGCGGCATCATTTGGGAGCACCTGACATAAAACAAGAAACAATCAAAGTGAGACGTGTAGCTGTGGATAAAGTTAAAGTTATGGCGGGTAAAAAGCGATCAGAAAAAGAAAAAAAAGAGCGTTTGAAAGACCGAAAGAAGGCCTGGATGCGCATGAAAAGAGCAAAAATGACTGAAGCTGAAGTGGAAGAAAAACGTCAGAAAGATAGAGAAAGATACAAAAGAAAGAAAGAAGCAGAAAAGTCAAACACGTCAGCACCGACTACTAAACGAGCAGCGTGGTCGGAAGAAGACTTAGCAGCGGCAGTTCATGCTGTAACCAGCGGCCAGTTGTCTACATATAAAGCATCTTCGAGATACAGCATTCCAAGAACAACCATCAGCGATCACATAAAAAGTGGAAAACTCGTCAAGAGATTGGGAAGACCGAAAACATTTTCCCGAGATCAAGAGAGAGATTTTGTCAAACGACTTAACAAGTTATCTGAGCTCGGAAAACCGCTTAAGCCAAAAATGATTCAGATAGAGGCATATACCTTCTGTAAAGAATTTAATATCCCTAATAATTTTAATGATAAGAAAAAACTTGCTGGGAAAGATTGGTTGAGGCAGTTTTTAAAGAGACACCCAGACTTAGCTACATACCATACTTAA
- Protein Sequence
- MRRHLEAKHGIKQETIKRRVAVNKIKGMRHHLGAPDIKQETIKVRRVAVDKVKVMAGKKRSEKEKKERLKDRKKAWMRMKRAKMTEAEVEEKRQKDRERYKRKKEAEKSNTSAPTTKRAAWSEEDLAAAVHAVTSGQLSTYKASSRYSIPRTTISDHIKSGKLVKRLGRPKTFSRDQERDFVKRLNKLSELGKPLKPKMIQIEAYTFCKEFNIPNNFNDKKKLAGKDWLRQFLKRHPDLATYHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -