Tmat014662.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419186.1:14590060-14593002[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 5.2e-16 2.2e-13 50.0 0.1 1 39 3 41 3 46 0.95 2 6 1.3e-15 5.4e-13 48.8 0.1 1 39 104 143 104 148 0.88 3 6 5.1 2.1e+03 -1.2 0.0 23 31 190 198 190 198 0.86 4 6 7.8e-17 3.3e-14 52.7 0.1 3 40 217 255 215 257 0.96 5 6 4.8 2e+03 -1.1 0.0 23 31 300 308 300 308 0.86 6 6 1.9e-06 0.0008 19.4 0.1 1 21 332 352 332 357 0.92
Sequence Information
- Coding Sequence
- ATGTGGTCGGAAGAAGACTTAGCAGCGGCAGTTCGTGCTGTCAGCAGCGGCCAGTTGTCTATTCGTAAAGCATCGTCTCGATACAGCGTTCCAAAAACAACCATCAGCAATCACATAAGAAGTGGAAAACTCGTCAAGAAGATGGGCAGATCGAAAACATTTACCCAAGATCAAGAGAGAGATTTTGTCAAACGACTAAAGAAGTTACCTGAGCTTGGAAAAGCGCTTAAGCCGAAAACTATTCAGATAGAGGCATATGCTTTCTACAACTCAAATACGTCGGCACTGACTGCTAAACGAGCAACATGGTCGGAAGAAAACTTGGCAGCGGCAGTTCGTGCTGTAAGCAGCGGCCAGTTGTCTTTTCGTAAAGCATCTTCTCGATATAGCATTCCAAGAACAACCATCAGAGACCACATTAAAAGTGGAAAACTCGTCAAGAAGATAGGAAGACCGCAAATATTTACCCGAGATCAAGAGAGAGCGTTTGTCAAGCGACTAAAGGAGTTATCTGAGCTGGGAAAACCGCTTAAGCAAAAAATAATTCAGATAGAGGCGTATGCTTACTGTAAAGAATTTGATATCCCTAATAATTTTAACAAGTCAGATACTTCTGCTCCGACTACTAGACGTGCAACGTGGGCTAAAGAAGACTTAGCAGCGGCAGTTCGTGCTGTAATCAGCGGCCAGTTGTCTGCTCATAAAGCATCGACTCGATATGGCATTCCAAGAACAACCCTCAGAAATAACGTAAAACGTGGAAAACTTATCATGAGGATAGGAAGACCGAAAATATTTACCCGAGATCAAGAGAGAGAGTTTGTCGAACGACTGAAGGAGTTATCTGAGCGAAAACCACTTAAGCCAAAAATAATTCAGATAGAGGCGTATGCTTTCTGTCAAGAATTTGATATCCCTAATAATTTTAATAAGAAGAAAAAAATTGCAGATAAGTCAAATACTTCTGCTCCGACCACTAAACGAGCAACGTGGTCGGAAGAAGACTTAGCAGCTGCAGTTCATGCTGTAAGCAACGGCCAGTTGTCTGCTTGTAAGGAAGGAAGGAATCACATAAAAAGTGGAAAGTTCGTCAAGAGGATGGAAAGACCAAAAACCCGAGATCCGAGATCAACAGAGGGAGTTTGTTAA
- Protein Sequence
- MWSEEDLAAAVRAVSSGQLSIRKASSRYSVPKTTISNHIRSGKLVKKMGRSKTFTQDQERDFVKRLKKLPELGKALKPKTIQIEAYAFYNSNTSALTAKRATWSEENLAAAVRAVSSGQLSFRKASSRYSIPRTTIRDHIKSGKLVKKIGRPQIFTRDQERAFVKRLKELSELGKPLKQKIIQIEAYAYCKEFDIPNNFNKSDTSAPTTRRATWAKEDLAAAVRAVISGQLSAHKASTRYGIPRTTLRNNVKRGKLIMRIGRPKIFTRDQEREFVERLKELSERKPLKPKIIQIEAYAFCQEFDIPNNFNKKKKIADKSNTSAPTTKRATWSEEDLAAAVHAVSNGQLSACKEGRNHIKSGKFVKRMERPKTRDPRSTEGVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -