Basic Information

Insect: Tetrapedia diversipes
Gene Symbol: PRDM1
Assembly: GCA_033822845.1
Location: JAOPTO010000680.1:1632559-1637203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.1e-05 0.0027 18.8 2.5 1 23 768 790 768 790 0.99

2 5 6.2e-06 0.0008 20.4 5.1 1 23 796 818 796 818 0.98

3 5 1.2e-06 0.00016 22.6 4.2 1 23 824 846 824 846 0.98

4 5 0.00082 0.11 13.7 1.5 1 23 852 874 852 874 0.97

5 5 5.5e-05 0.007 17.4 0.2 1 22 880 901 880 901 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.1e-05	0.0027	18.8	2.5	1	23	768	790	768	790	0.99
2	5	6.2e-06	0.0008	20.4	5.1	1	23	796	818	796	818	0.98
3	5	1.2e-06	0.00016	22.6	4.2	1	23	824	846	824	846	0.98
4	5	0.00082	0.11	13.7	1.5	1	23	852	874	852	874	0.97
5	5	5.5e-05	0.007	17.4	0.2	1	22	880	901	880	901	0.96

Sequence Information

Coding Sequence: ATGGAGGCCAGCGAGTGGGATCACGCGACCTTGAGGGAAGAGGAATTCGAGCAGCATGCCGTATATTTGGTACCGGATGTGGCGGCATCGCCAGGCGATACCAATCGCGCGGAGGCGTCCCTGCCAAGAAATTTGGTCCTCAAACCTTCTCAGGCCCTCAACGATGTACGTTCTTCCGCCAAAGAATCCTTTCTTGAGACCTCCTCGGTTTTGGGTGTTTGGAGCACAAGCTACATTCCTAAGGGGACACGGTTCGGTCCACTGGTGGGCCAAGTGTACACCAAGGACTCGGTGCCGGCCGACGCGAACAGGAAGTACTTCTGGAGGGTGTACAAGAACAACGAGCTGTTCTACTACATCGACGGTTATGACGTCCAGAAATCAAATTGGATGCGTTACGTAAACCCGGCTTATTCGTCCGAATCGCAGAACCTAATAGCATGCCAGTATAAGatgaacatttatttttacacgaTCAAGCCGATACTACCGAACCAAGAGCTCCTGGTCTGGTATTGTAGAGAGTTCGCGGAAAGGCTCAACTACCCATTGACGGGTGAACTGATGCTTCAAAGAATACGACAACAGGTGCAACAATCTGCTCTACCAGCCGAGATCCCGGCCGCCGTGGACGTTGTATCGCCCTTAAAGGATCCGACGATCTACGAGAGACGCTCGCAAATGACCCCGACCGATGGTTCCGTTAGATCGGACGAAGGCTATCATTCGAACGGTTATCACGACGAGATCCTCACGCCCCCGGAAGAGAGCAGCGAGTCGGACTCGGAGAACAACTACGTGCTGGACTTCAGCAAGAACGCGAAAACGTCGGTGTGCAGCAACAACGAGGTGCTCAAGCAAGACAATGCGGCCGCGAAGAACGAGTACAGGAAGGTTAAGATCAAGATCACGAAGACCTACGGGAACTTTCAGTCGTCGAAGAGCCTGGACGCGAACGGGAAGGACAAAGATCAGGAGTTGCCGAGCAGAGCGGTGACCCCGGAGATACAGAAGCCAGTGTCGCCCATTATTCTGCAGAAGAACACGGTGCTGTCGACGGTGAACGAAGACGAGATACCAGAGAAAACCCCGAAACCTTTCTACGAGGCCGAGGTCAAGGGTAATCTGCCTGTTTCCGGGAGACCCGCCTATTTGACTAGCCCGAGCAGCTCTATCCTCGAGAACATCCTCCTCCGCAGCAGCACcgacagcaacaacaacaacaacaacagtcACAACCATCACCACAACGGGGCCCAACAGCAGCAACACCATCAGCACCACCAGATTCATCATCAGACGCACGTGGACTCGGTCACGCCACCGCCGTCCAGCCCGACGGAAATGGCGTACTCCTACAAGAAGTCCCATCGCTACGGAAACATTCTACCCTGCAGTCCCGACTCCAGCTCGAATCTGCCCATGCAACCGGACACCTGCGTCAATTCCACCAGCGGCAACAGCACCCTACCCATGCAAAGTCCCACGAGTAACCTGCACTCCAGCACGGGGAGCCTGCACTCGAGTACGGGGAACCTGCACTCGAGCACGGGTCCCAACAACGTTCTACAGTCCCATCCGGGGAACATCCATTCGTCCAGCAACGCGAGTAATCATCACGTCAGCGCGAACGTTCTGTCGTCCACCTCGATACTGACGTCCACGAGCAACCTTCACCCCACGACGACATCCGGTAACTGTCCGCCCAAGAGGAAGACCAAGAGCCCGTCACCGTCGGCGAATCACACGACAGGCGCGTCGACTCCCACGATCCTGTATTCCGGCTCCGGCGGATGCCAGATAGAGTCCAGCCCGGTCTACCCTAGCTCCGCGGCGAACAGCAACCAGAGCGTTTCGCCGATTTCGCCTATCCAGTCGCCCTCGTCCTACCCATACGGCATTTACCATCAGAACGGCGCGTTGCATCACAACGTGGCGCCGTTGTCCATAAACTGCACCGCCTACTCGCCGACCCCTAGCGGGAACGTGGTCTACGAGAGGGCCGATGGTAGGCGGCTGGAGGCTGCGACGAGCAGCCACCAATTACCGACCTCCTCGACCATGCAAATCGACAGCAATCAGACGCTAATAGCTGGCACGCACAATCTTCACCTGGGCCATCATCCCGGCCTCACCATTCACGCGAACTCCTCGTCGTTGAACCGGTACTCCCCCGCGAGCTCGTTGTCCCCGGACGATCACGGTTGCTCGCAGAGCGGCTCGCTCAGCCCGAACTCGCAAGGGTCCAGGGGCTACAGGTCGTTACCGTACCCGTTGAAGAAGAAGGACGGGAAAATGCATTACGAGTGCAACGTCTGCTGCAAGACGTTCGGCCAGCTGTCGAACCTCAAGGTACACCTGAGGACTCATTCCGGCGAGAGGCCTTTCAAGTGTAACGTTTGCACCAAGAGCTTCACTCAGCTGGCCCATCTGCAGAAGCATCATCTCGTGCACACCGgTGAAAAACCGCACCAGTGCGAGATCTGCAAGAAGAGGTTCAGCTCAACCTCGAACCTGAAGACCCACTTGAGACTGCATTCCGGCCAAAAGCCCTACGCCTGTGACCTGTGCCCCGCGAAGTTCACTCAGTTCGTTCACCTGAAGCTGCACAAGAGGTTACACACGAACGAAAGGCCGTACACCTGCCAGGGTTGCGACAAGAAGTACATTAGCGCGAGTGGCCTTAGGACCCACTGGAAGACGACCAGCTGCAGGCCGAACAACATCGAGGACGAGCTCGCCCTGGCCGCAGCCGTGGGTTCGCCGTCGTACTACGAGTACGGCCCCGACATGAACGTTGGAAACATGCCGAAGGAATGTGAACTGGAGCACATCGATAATTACGAGAGGCACGGTTCCGCTCACGGGCCTCACTCCACGTCTCTCCACAACCTGGAGAACTCCGTGGGCCGGCCAAGCGTCATCGAGACCTCCCAGCCTCACATAATCGAGTGCACCTAA
Protein Sequence: MEASEWDHATLREEEFEQHAVYLVPDVAASPGDTNRAEASLPRNLVLKPSQALNDVRSSAKESFLETSSVLGVWSTSYIPKGTRFGPLVGQVYTKDSVPADANRKYFWRVYKNNELFYYIDGYDVQKSNWMRYVNPAYSSESQNLIACQYKMNIYFYTIKPILPNQELLVWYCREFAERLNYPLTGELMLQRIRQQVQQSALPAEIPAAVDVVSPLKDPTIYERRSQMTPTDGSVRSDEGYHSNGYHDEILTPPEESSESDSENNYVLDFSKNAKTSVCSNNEVLKQDNAAAKNEYRKVKIKITKTYGNFQSSKSLDANGKDKDQELPSRAVTPEIQKPVSPIILQKNTVLSTVNEDEIPEKTPKPFYEAEVKGNLPVSGRPAYLTSPSSSILENILLRSSTDSNNNNNNSHNHHHNGAQQQQHHQHHQIHHQTHVDSVTPPPSSPTEMAYSYKKSHRYGNILPCSPDSSSNLPMQPDTCVNSTSGNSTLPMQSPTSNLHSSTGSLHSSTGNLHSSTGPNNVLQSHPGNIHSSSNASNHHVSANVLSSTSILTSTSNLHPTTTSGNCPPKRKTKSPSPSANHTTGASTPTILYSGSGGCQIESSPVYPSSAANSNQSVSPISPIQSPSSYPYGIYHQNGALHHNVAPLSINCTAYSPTPSGNVVYERADGRRLEAATSSHQLPTSSTMQIDSNQTLIAGTHNLHLGHHPGLTIHANSSSLNRYSPASSLSPDDHGCSQSGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNNIEDELALAAAVGSPSYYEYGPDMNVGNMPKECELEHIDNYERHGSAHGPHSTSLHNLENSVGRPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230337;
90% Identity: iTF_00215282;
80% Identity: -