Tdiv024627.1
Basic Information
- Insect
- Tetrapedia diversipes
- Gene Symbol
- gtf3a
- Assembly
- GCA_033822845.1
- Location
- JAOPTO010002393.1:1229712-1234050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00012 0.016 16.3 0.1 2 23 738 759 737 759 0.97 2 17 7.9 1e+03 1.2 0.6 1 19 765 783 765 784 0.91 3 17 0.84 1.1e+02 4.3 1.1 3 23 793 813 792 813 0.97 4 17 0.00026 0.033 15.3 1.2 3 23 822 843 821 843 0.98 5 17 0.0026 0.34 12.1 2.0 1 23 850 873 850 873 0.95 6 17 9.3e-05 0.012 16.7 0.7 1 23 879 902 879 902 0.94 7 17 1.3 1.6e+02 3.7 2.5 2 23 910 930 910 930 0.94 8 17 1.4e-07 1.8e-05 25.6 2.1 2 23 936 957 935 957 0.97 9 17 2.2e-06 0.00028 21.8 0.2 1 23 963 985 963 985 0.99 10 17 0.00055 0.071 14.3 2.4 2 23 997 1019 996 1019 0.95 11 17 0.0077 1 10.7 2.5 1 23 1025 1048 1025 1048 0.96 12 17 0.025 3.2 9.1 3.8 3 23 1065 1086 1064 1086 0.95 13 17 0.0011 0.15 13.3 1.4 2 23 1093 1115 1092 1115 0.96 14 17 3.8e-05 0.0049 18.0 1.0 2 23 1123 1144 1122 1144 0.96 15 17 0.0012 0.15 13.2 2.3 1 23 1150 1173 1150 1173 0.96 16 17 0.32 41 5.6 3.2 2 23 1180 1201 1179 1201 0.96 17 17 0.0094 1.2 10.4 2.6 1 23 1207 1229 1207 1229 0.98
Sequence Information
- Coding Sequence
- ATGCAGCACACTGAAGTTAATAACAAGGATCATAATTATAGTGAAGTAAAATTAGATAATCTTCAATATAGTGGTagtaatatacaaaatatatgcAACAATGATGTTAAAACTATATGTAAATCAAACAAATCTAAAGTAGTATCAAACAAAGAAACATTTGGtcaaattaaagatattaatgaattaaaaaaaataacaccACGTGTTAAATTATTGACTCATGATGCAAATAGTTTGAATGAGTTAACTAAAATTTCTTTGCACAATAAAATATCTGCACAAAAAAGACTATCGATATTGGAACAAACAAAAcaagaattaaaaaagtattgTAGAACTTGTGCTGGTTTGAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGACTAAGTCaacaaattaaacatttagAAGAAATAAATCCATATGATAGCTTATCAACTCAAATGTGCATGGATTGCATTTGTGATTTAAAAATgagttacaaattttttatgcaaattaagaAGGCagaagttaaattaaaatccATACACATTAGTCTGGCTGATAcagtaacaaaaaatatagaGGTAAACAAAATACAATCTAGTGGAAATTTTGAGAAACAGGTAGAAAACATGTCAGTGTGTAATGCAACAAATCCATCTACAAGTTCAGAAAAGAATGAACATGTTTCTACATTAAAATTATCTACAACTTCTTCACTAAAAAATGATcaggaatttttaaaaaagattgATAAAGTAGACCTTGGAAAATCAAAAAATAAGGCTGAATTAGAGATTTTTGAAGATTCAATGATTCAACAAAGTAGTGATGATAATGAATCAATAGAAGAATTTGATCCAGATGATCCTCCTTTCCAACCTGATAGTTCTGATGCTGCAGACTCAGATGATGAAGTAGAAATATCAAATGTAAAAAGACGACATATTCAGCAGAAAGAAAGTACGAAACAGTGTTCACAATCAATGTTTGTTTCTGATAATATTTCAGTtttagataataaaaatactgatTTTAATCAAACAACATATAACTATGACACATGCTTAAGAACGTACATTAAAGTACAGGGCACAGAAAGTAATAATCACTTTACTGAGTCACATAACATCAATAAATCGGATCCTATGTGTAATACTGAAAGTACAAAAGAATGTTTGAAACAACCAAATATATTAAAACGCAGGCTTTTATTGCaaactaaaaaagaatatacagAAGAAACTGATGCAAATATTTGTCAATCTAATATTTCTGATAAAAGTGGAAATCATAAGGATTTTAAAGTACAAAAATTAGATGTAAACAATTCTTTGAACATTAACAGTAATCAAGAAGATggaattatgtatgttactgTAAAGGGATCAaaaccaaatgaaatattgTTAGTAAAGGTTAAAAAAATGGATAAGCCAGTAGAGAAAAAGGATGATAAATCCATAGGAAAAAAAGGTTTTGATATTAAACCAatggaaaaaattttaaaacgataTGAAACATTAgttacaaaagaaaaagactTATTTCCAGAACGAACAAAAAAGTCGGAAATAAGAGAACAAATAATAGAAGAACAAATAGAAGAATATAAGAAAAAGCGAGAGAAAGTATTGGGTGGacatgctaatatttcacttccTTTAAAGCTTGAGGAACCCCAAACTCGTTATTTTAAGCGCAGTGAAGGTCAGGATAATCAAAGATCATTCACACATATTGAAGATGATACTgttgtaaatatacaatttgaTAAAGATGATAGTgaatgtaatacaaatattaaaactgATAATGATATTTCAGAGATTATTGAACCGGTTAAAGAAAAATCCACTAATGAAAAGGCATATGTAAATACTGAAGAATATTTATCGCGTTTAGCaaaacttaaattaaaatgggaagaagcaaagaaaaagaaagaatctCTTCAAAAAGAATTGGATGAATCCTATACAGAaggaaacattgaaaaattggCAAGAATtttaggagaaaaagaaaagaacttGCAAGAATttcaagattatttaaaacaacgtaaaattgtaattactaGATTAAAAGATGAGGatattatttctctttatGAAGACAGAAATAATGCAgtgtttaaaaatagtttaccTGATTTGATAGATGAAAGTCAGCCAATAGATTATATTCCAGaggaaaattatttggaatGTGATTATTGCCCAGAAACGTTTGCTTCTAAAGAAGTTCTTGAAGAACATTTAAAAATGcatgattataaaattatgcattattGTGAAGATTGTATGGAAGAATTTCCAACAAATAAAGCAAAAAGAAATCATAAtgtaatttgtataaaaaagttgttatgtaaatattgtgaCATCATGTTAGATTCAAAAGGAAAAAAACGTCAGCATGAACAGAAACATTGTGACAGTATGTATGGACAATTATGTGATGTATGTggtgaaaaatttaaacatcaGGGAACATTAGATCAGCATGTAAAAACACAGCACATGAGTTGGGAGAAAATATATCAATGTCCAAAATGCCCTAAAAAGTTTGCATTTAAACAAAAGCTTAGTTTTCATCTAAAATCTGTGCATACAACACTAAGGGCTTATTTATGCGAAGATTGTGGAGCTGATTTTAAAAACCCTGCGAGTCTTAGACATCATAGAATACGTAAACATCAACCAGTAGGTAATAAAAGAGAATGTCCAGTTTGCCATAAATTAGTGCCGTTCTATAGTCTTTCGAAACATATGCATACTCATAAAGCATATACTATACAGTGTCCACATTGtgataaaatgtttaaaaatagttcAACTTTAAAACAACATGTAAGAATTCATGAAGATCAGCGCCAATATCGATGTGATACTTGTGGTGTTGGGTTTAATAGACGAGATGGTTTAAGATTACATATGAGAGTGCATGAAAAAACTGATAGCAGAGGATTGAAAGAATGTTCATGTCAAGTATGTGGTGAAAAGTTTCCAAATCACTCTACTCTTGTTATACATAGAAATCGAGTTCATAAAGATGGTAGACAATATACATGTCATATATGTAACAGGTCAATGATTTCTACTAGATCATTAGAATGGCATATGTCTCATATACATAATGAATCACCAATACATAATGAACCATCAGAAAAGAAAAGAGCATCATGTTATCACTGTAACAAAACATTCAAAACAGAAATGATTTTAAGAACACATATTAAAAACACACACATGGAAAAAGACCCTATGAAATGTTTAGATTGTGAGTTAACATTTACTTCTGAAGTAAGATTAAGACACCATATGATGGTAACACATAATAGATTAGAAGGGACTTTGCCATGCCCTCATTGCCCGAAACGATTTGTAAACCAGCTTAGATTAAAAACTCATATGATATCTCATTCTGAAGAAAGGCCATACACTTGTGAAATTTGtggatttaatttaaaaactaaaatacaATTGATTAAACATCATCAAAACAGACATAGTGATGAAAGGCCTCTTCAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGTGCTTTAGTATGTCATGAAAGAACTCATACAAATGAACGACCATACTCTTGTAGTGTGTGCAGACaacgttttaaatatttaggtgataaaaataaacatgaaAGGCGGCATGAAAGTTTAGGAGGGTCTGGATTTAAAAGAATAGTGCTTGGTCGAAATATCAAAGCTAAAGTGCAAGAAGATTCTTCTTGTTCTGAACACGAACACGAAGGTTTAACTAATACAGAACCTCAGATTCCTGAAAGTGAATATCAAGAACAAACAGATCAACAATTTGAAGAAGAACAAATAGTCAAGTTTGAAGAAGAACAAATAGTCAAGTTTGAAGAACAAGAAATAGTAAAGTTCGAGGAACAAGAAATAACAGAGGAATATGAACAAGTATATGAACAgGAATATGAAGAGACATCTAGAGAGGCTTCTGATGCAGCAGAAGTTATAATGAATATGGAAGATACAACTGTTTACACAGAAGAAGTAACTGCAGATAATATTGAACCTGCAGAAATGATGACAAATGAAATGATGACAAACGAAATACTACAATCAGGTGCTGTAGTTCATTTGCAACAAGAAGATGATTCAGGAAAAATACAAGTGATCCCAGTGATGTTATCCTTGCCTGATTTATCTGATGCAAATACAGAAGTTAATTTAGCTACAGCATCcattatgtataataattaa
- Protein Sequence
- MQHTEVNNKDHNYSEVKLDNLQYSGSNIQNICNNDVKTICKSNKSKVVSNKETFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKISAQKRLSILEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIKHLEEINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHISLADTVTKNIEVNKIQSSGNFEKQVENMSVCNATNPSTSSEKNEHVSTLKLSTTSSLKNDQEFLKKIDKVDLGKSKNKAELEIFEDSMIQQSSDDNESIEEFDPDDPPFQPDSSDAADSDDEVEISNVKRRHIQQKESTKQCSQSMFVSDNISVLDNKNTDFNQTTYNYDTCLRTYIKVQGTESNNHFTESHNINKSDPMCNTESTKECLKQPNILKRRLLLQTKKEYTEETDANICQSNISDKSGNHKDFKVQKLDVNNSLNINSNQEDGIMYVTVKGSKPNEILLVKVKKMDKPVEKKDDKSIGKKGFDIKPMEKILKRYETLVTKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHANISLPLKLEEPQTRYFKRSEGQDNQRSFTHIEDDTVVNIQFDKDDSECNTNIKTDNDISEIIEPVKEKSTNEKAYVNTEEYLSRLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLARILGEKEKNLQEFQDYLKQRKIVITRLKDEDIISLYEDRNNAVFKNSLPDLIDESQPIDYIPEENYLECDYCPETFASKEVLEEHLKMHDYKIMHYCEDCMEEFPTNKAKRNHNVICIKKLLCKYCDIMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESPIHNEPSEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKAKVQEDSSCSEHEHEGLTNTEPQIPESEYQEQTDQQFEEEQIVKFEEEQIVKFEEQEIVKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNIEPAEMMTNEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684931;
- 90% Identity
- -
- 80% Identity
- -