Tdiv005921.1
Basic Information
- Insect
- Tetrapedia diversipes
- Gene Symbol
- -
- Assembly
- GCA_033822845.1
- Location
- JAOPTO010000718.1:94203-98744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.18 23 6.4 2.2 1 23 401 423 401 423 0.94 2 18 0.00083 0.11 13.7 0.9 2 23 458 479 457 479 0.98 3 18 0.011 1.5 10.1 1.3 3 23 607 627 605 627 0.94 4 18 0.00066 0.085 14.1 0.6 2 23 631 652 630 652 0.96 5 18 0.029 3.7 8.9 2.5 1 23 725 748 725 748 0.92 6 18 0.00028 0.036 15.2 0.3 1 21 754 774 754 778 0.92 7 18 0.0011 0.15 13.3 4.2 2 23 851 872 850 872 0.95 8 18 0.00034 0.044 14.9 4.4 1 23 929 951 929 951 0.96 9 18 0.00031 0.039 15.1 0.7 1 20 956 975 956 977 0.94 10 18 0.045 5.9 8.3 0.5 2 23 988 1009 988 1009 0.97 11 18 1.4e-05 0.0018 19.3 0.7 2 23 1048 1069 1047 1069 0.97 12 18 2.8e-05 0.0036 18.4 1.6 1 23 1074 1096 1074 1096 0.95 13 18 0.00016 0.02 16.0 2.9 1 23 1102 1124 1102 1124 0.98 14 18 5e-06 0.00064 20.7 0.4 1 23 1140 1162 1140 1162 0.95 15 18 2.1e-06 0.00027 21.9 0.5 1 23 1168 1190 1168 1190 0.99 16 18 4.4e-05 0.0057 17.7 0.2 1 23 1196 1218 1196 1218 0.97 17 18 0.00016 0.021 16.0 4.1 1 23 1224 1246 1224 1246 0.96 18 18 0.012 1.5 10.1 0.4 1 20 1252 1271 1252 1273 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGGAATAAATACGTCTGTTTCACCTCAAAACGAAGGAAGCATTGTGTCGACAATAGAAATATGCCGTGTTTGTCTTCTTGGTAATTTAGTGATGCGAGATTTATTTTCGGACGATGAGGTTGCATCTCTTTCAACAAAGGCAATGAGTTTCGCTAATGTTAAGATGTTACCTGGAGATGGCTTACCGACACGAGTGTGCTGCATATGCGCAGACAAACTTGAATCCGCGTATGAGTTTAAGCTACAGGTGGAACAAGCTGACACTGTTCTTAGAGAAAGGTTTGTTACTATGAATATGAAAGAAGAACTTTTTTTCAATGAGGTTGAAGTACAattggaagaagaagaacaaaacgGAAATGTAGAGGAGTTACAGGTGAAGAATGATTATCAAAGTACAGGCGAAACGCTTGCAACAATCTCTCAGGAAGAGAAATCTGTTCTTTTGAAGGAACAGTTGGCTTTATTTCAAgtagaaaaattaatcaaccaagaagaagaaataagagAACAGAACACTGGCGCTGTAATGGAGGAAGTAATTGATCAAACGATTACTACAGAGCAAATATCAGAGGATTGTTTAACTCATGAAGAGGAAgatgaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaagaagaggaggaggaagaggaagaagtagaagatgaagaagatgaagatgaagaagtagaagaagaaatcaaaaatattacaaatgtCCCTAAGaatgaagaaatattaaaagacGAAAACAGGGATAATGATTGCCTTGATAATATCCCAACTGTGGAACATGATTACATATTGCAAACAGAATGTGTATTATCTAATGAAGGTCAACAACAAGAACAACAGCAACGGCATCAATATACCTCGGAGGAATCATTCCAGCGCGAGAATGGCACAGAATATGTGAATCTGTTAGTAAAAGCGGCCAGAGTAACAAATCAAGGCGAAGATGAGGAAGAAAAGTCGAAAGTTGCAGACATGAATGTTAAGGTAGAGCAAGAATTTAATTGTGCAAATGAAACTAGAAGAAGCAAACGTAAATTAGTTCGACGAAACttcgaaacgaaacgagactctgacgaagaaaattattttgaaaatttgaatttaagtTCGAGGTTGAAGAAAGTTCAAACCTTCGATCAAAcggagaaatttttttttctatgttaTCTATGCGACAAGGAGTTTTTGTCGAAGAACGTTTTAAGGGAGCATATGCATTCTCACGAGGAGGTCCGAAAGGCACTGTCTTTAAGGAAAACATTGGATACACCGCAGAAGAACATCTGTAATCCCACAAAGTCGCCTCCATCAGGTAAAAGATCGAACAAGTGTCCCTATTGTGGgaaacaatatatatatataatctcgtttagtaaacatttaaagaaacacgaaagggaaaaagaagaggGAAAGGAGGTAGAACCGTTGCCTTTAGAAATTTCGTTTCACGAACATGAACACAGTTTAGATCTTGATGATTATGTGAATGCATCGCGGCATTTAAATTCTGAGTACCGAAAACGAGCCAAACAAAAAGGAGAAGGCGTTGTTACGGGAAGTACGGAGATAGATGGAGGGATAGAGGAGGAAAGAATGGACGAGGAGTATGGAGTGGAAAGAAAGTATAATGAAGCCGAAAGAGGAAGTAGAGACAGATACGATGGTGGTAGTAATAACAATGACGACAACGGTGCCAACGGACAAGAGGATATGAACTCGAATGAAGGAAATGAACTAGAGAATGGCCATGTTCGTACACAAACATTCGGCTGTGACAAGTGTTCGGAGAAATTTTATACAAGGCGTGGATTACGAAAACACGCGACTTTGCATACTGCTCTCAAGTGCAGCATATGTGAAGAAGAGTTCAATTCATTGGAGAAATTAAGAAACCATAGAGCAAAACACGTTGTTGAAGGTGTATTAACCGAGCAAGAATTGGAAATGAATATGGCATGTTCTGTCAACAAGGAGACAGGTGATTATGAGATAcaggaaaaagaaagggaagaaaGGATTCGCGGGATGGAAAATGAAGAAGTAGCAGTATTTTTAAGGACAGAAAATAATACGTCGAAGAAAAACGACAGAAACAAGGAGACCCGTCGTCATTTGGGGACCGACTATAATTGCAAGGTGTGCTGTCAACGATTTGCGACAAAAGATCTGTTGCAAAAACATGCAGAACAACAACATGAACGTCTGAAAGCTTACAAATGTACAGAGTGTAACAAAGTATTTGGTAATGAGCTTACTTTACGCAATCATCTTATAGCTACCAATCATACAACCTTCCTGCATGGACAGGAATATGATCCTAACAAACGTATTAAAAGAGTCGCTGCAAAAGCCGCGCAGAAGATTATTGATAAAATTACAAGTGATAATGGATTGGAAGATTATGACGAAGAACAagagaataatgttaagaTCGACCGTGTTAATTCCACAGATGGTAATTATGGTCGTAATAAACGAGAAATTTCCTCGCAAAAGAAACTGGAATGTATGACttgcaataaaaaatgtaGTTCGAAGCAATCGTTAACAAAACATATGGAGCAACACGTGAAAGGTGAGCAACAATTAGGAGTGAAATCAGAAAGGCAAAAGCAATCAGCAGAGAGAAAGGAACGACAAAGAAACTGTGGTAATGAGGAAACCGATAACGGGGACAACAAAGACGAGGATTACGATTCAGATTTCGAAAGCGGTTTGGACTGGCCGATGGACAATCACGAATGTGTAAAGTGCAAAAAACGGTACAGTACAAAAAAATCGTTGTTACGTCATCAGTTGTTGCACGAGGAACCAAACTTTGAATGCGACATTTGTAACGTTAAATTCTACCGTAAGGACAAGCTAAAAGCCCATTACGATAAGTGTTCGGAAAAGAATCCCGATCAAGTGAGGAAGTGCAATATTTGTGGAGATAGTTTTGAGAACAACGAGATTTTGCGGGAACATAGATCGAAACATGTTACAGAAGGTATTCTTACGGAAGAGGACTTAAGAGACATTGAACCTCGACCTCCCGAGAAGAAGGTAGGCGAGAAAGTTGGTAGAAAGAGGAGAACTGATATTGTAGGTTTGGAATGTACAGAGTGTAATAAGCGGTATACATCCAGAAAAGGACTTTTACGACATATACAAGTCCACGAGGGGAAAAAGTACCTATGTGATATATGTCCGAAGAAATTTTATAGACGGGAACACTTGAAAATACACGTAGCTAAACATAATATGATCAAACCATACAAGTGTACGCGTTGCACGAAACGTTTCATCAAAGAGGAACAATTAACGAATCATTTGTCAAAACATGACAGGACgttcaaaaaaaataaagaaacggaCAGTTCGAAAAGATTTCTTTGtgaaatttgttcaaaaagtTTTACTCAATCGACGACGTTGATCGCACACCTTAGGGCGCATAATGGCATAAAACCATATGTTTGCGAGGTCTGTTTACGACCGTTTACAACGAATGCTTATTTAAAAATGCACATGAGGACACATACGCAAGAACGGCCATATATTTGTCAGTACTGTTCTCGAGCATTTGCCAGAGCTGATACACTCGCCAATCACCTGACATCGCACACGGGCGAGGCCAAGTATCATTGCAAGTACTGTCCGAAGAATTTCCGTCGATTGAAATCTCTTAAAGAGCACGTTTTTATTCATACTGGTCAAAGACCTTATGCCTGCCCTACTTGTGACCGACGATTCAACAATAATGGAAGTCGATACGCTCATAGTAAACGATGCAAACAGAATTTAGTTCAAAATCAGAATCGGGCTCAATCGTTGACCGCGCAAGCGCAACCGACTCAAAATCAGCAAAGGGTATTGCAACAGGCTACTCTTGGACAAGGTCAAGTAGTAAAgacacaaaatattaaaaccaTCACTATTACTAGACAACCTGAATCAGTCACTGCTCAACAAGCGATTATGCAACATCAGGAAATATTAATGCCTTTGATACTTCCTCTTACAGTCACCCTTGCCGATGTCGACGAGGAAGTTATTTTACCAGAAGGaactaaaatatttactacgtCTTAA
- Protein Sequence
- MDAVGINTSVSPQNEGSIVSTIEICRVCLLGNLVMRDLFSDDEVASLSTKAMSFANVKMLPGDGLPTRVCCICADKLESAYEFKLQVEQADTVLRERFVTMNMKEELFFNEVEVQLEEEEQNGNVEELQVKNDYQSTGETLATISQEEKSVLLKEQLALFQVEKLINQEEEIREQNTGAVMEEVIDQTITTEQISEDCLTHEEEDEEEEEEEEEEEEEEEEEEEEEEEEVEDEEDEDEEVEEEIKNITNVPKNEEILKDENRDNDCLDNIPTVEHDYILQTECVLSNEGQQQEQQQRHQYTSEESFQRENGTEYVNLLVKAARVTNQGEDEEEKSKVADMNVKVEQEFNCANETRRSKRKLVRRNFETKRDSDEENYFENLNLSSRLKKVQTFDQTEKFFFLCYLCDKEFLSKNVLREHMHSHEEVRKALSLRKTLDTPQKNICNPTKSPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEREKEEGKEVEPLPLEISFHEHEHSLDLDDYVNASRHLNSEYRKRAKQKGEGVVTGSTEIDGGIEEERMDEEYGVERKYNEAERGSRDRYDGGSNNNDDNGANGQEDMNSNEGNELENGHVRTQTFGCDKCSEKFYTRRGLRKHATLHTALKCSICEEEFNSLEKLRNHRAKHVVEGVLTEQELEMNMACSVNKETGDYEIQEKEREERIRGMENEEVAVFLRTENNTSKKNDRNKETRRHLGTDYNCKVCCQRFATKDLLQKHAEQQHERLKAYKCTECNKVFGNELTLRNHLIATNHTTFLHGQEYDPNKRIKRVAAKAAQKIIDKITSDNGLEDYDEEQENNVKIDRVNSTDGNYGRNKREISSQKKLECMTCNKKCSSKQSLTKHMEQHVKGEQQLGVKSERQKQSAERKERQRNCGNEETDNGDNKDEDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPPEKKVGEKVGRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCLRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLVQNQNRAQSLTAQAQPTQNQQRVLQQATLGQGQVVKTQNIKTITITRQPESVTAQQAIMQHQEILMPLILPLTVTLADVDEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -