Tdiv008825.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetrapedia diversipes
Gene Symbol
SCAND3
Assembly
GCA_033822845.1
Location
JAOPTO010000859.1:533200-535618[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8.2e-06 0.0011 20.0 3.3 2 23 282 303 281 303 0.97
2 15 0.033 4.3 8.7 1.8 1 20 309 328 309 332 0.95
3 15 4.4e-06 0.00057 20.9 1.4 2 23 411 432 410 432 0.97
4 15 5.6e-06 0.00072 20.6 1.8 1 23 438 460 438 460 0.97
5 15 0.00076 0.098 13.8 0.3 1 23 466 488 466 488 0.97
6 15 2.6e-07 3.3e-05 24.8 0.9 1 23 503 525 503 525 0.98
7 15 3.5e-05 0.0045 18.1 0.5 1 23 531 553 531 553 0.94
8 15 8.9e-06 0.0012 19.9 2.2 1 23 559 581 559 581 0.98
9 15 0.00074 0.095 13.9 0.2 1 23 587 609 587 609 0.99
10 15 9.7e-06 0.0012 19.8 0.3 1 23 615 638 615 638 0.93
11 15 1.7e-05 0.0021 19.1 1.3 1 23 644 666 644 666 0.98
12 15 0.00036 0.047 14.9 4.7 1 23 672 694 672 694 0.98
13 15 5.5e-06 0.0007 20.6 0.2 1 23 700 723 700 723 0.96
14 15 6.3e-06 0.00081 20.4 0.5 1 23 729 751 729 751 0.95
15 15 3.2e-06 0.00042 21.3 4.5 1 23 757 779 757 779 0.99

Sequence Information

Coding Sequence
atgAATTCGCTTTGCAATATCACGAACAAAAAACTATGTCATAGAGGGCAAATAGATGTAATAGATATGCCGATACAATTAACTTGTAATTACaagtatttttttgtttatgaaGATCAAATATCCAGATTTGTTGTATTAAAAGGTTTACATGGGAACACGGCAAATGAAGTAGCTATTAAACTTTTAGACATACTGACTATTATTGGTGCACCACAAGTTTTACAAAGCAGCAATGGACGTAAATTTGCAAAGGAAGTTGTAGAAGAGATACGTCTTTTATGGAAAGATTTCATAATACTGCATggagaaattattaataacaatgaaCAGAACAGagattttaagaatttacttgAATCTTGGGTTGAGGAAAATCCCACAAAAACATGGTATGAAGCTTTGAAACACATAcagatttttcaaaattcaacatttcgctgtaaaaatggaaaaattccTTATGACATGTTGTTTGGAAGAAATGTACATGAAAAGCTCAAAGAATtaagtaatacagtaaattcAACAGAAAATATATGGACAGAAGAAGAATGGATTAGTCTTCTGTCCAACAAAACAGGTGATGTTAAGGCAGAAGGTGATCTACAGCTTATAGCAAGTTCAACCTTTCCAGACATCAGAGATGTAGACAGTttaaaagaCTATGAGAGTGAAGACTCTTATAGTGAAACTAAAGACGAGCTTCAGAGAGATACTCctgattttaattttgtaaatgtcaAAAGTGAACCTTTAAATATGCATACAGAAGATTCAGTATTCGAGGATGAATCTGGAATAGATGATAAAACAACAACTGTAGGAAATCAGgttaatttaaaatgcaaaatCTGCCAAAAGCAGTACATGAAGCCTggacatttaaaaaatcatatgAGAACGCACATAAAAGGGAAAAAGTTTGAATGTAAATTGTGCAGTAAAACGTTTcatgtattaaatttatatgagAAACATATATGGCAATCTCATAGGcaaagtaaattattaaattcaaatagaAACAGTagaagtaaaaatttacaaaatgaaACGACGTTAGATGTAAAAACATCGAAATTAAGATGTTCCTCGAATTCAGATCTTAATAAGGTACAATCTGATAAAGCAAATGATAGCTCAAAAGTAACAAAAAGCCTTCTtaaggaaaggaaaaagattACGGTAGACAATCGTTCACTGAAAATAAATGGAGAACCAAATCTGGAATGTTCATATTGCAATCAAAAGTTTAACTTCCCTAGCGTATTAAAAAGACATATGCGATCGCATACGAACGAAAGACCTTACATCTGTGAGATATGTAATAAGAGCTTTAAACAGTTGGGCCATCTTAGTCAGCATTCTTTGACGCATAAGGATTATCGTTCTTTCCATTGTGCGGTTTGTGGAGTAAAGTTCGAGTCGTTGGGCTCGTTAAAGATCCACGCTCAATCTCATAAAGAAGATTATACCTTAAAAACTAAAGATACTTTTCGTTTATTCGAATGTGATAATTGTAAAAAGGTGTTTACAACTAAAAGTGTTTTGGAGCGACATATACTTACTCATTCTCATGAACGTCAATTCCCATGTATAATTTGTGGAAAAAGGTTTAAACAAGCAGGACATGTGAAGTCTCATATGTTGGTACATACAGGTGAACGAAAGTTTGAATGCTCGGTTTGTAAAAAGAGATTTAGCCTTTCGAATTCTCTGAAGAAACACATGTATGTGCACAATGGAGAAAAACCTTATCAGTGCGATGTATGTGGTGCAAGATTTCTTGAAAAGAGAAATCTAAACGGACATCTAATGACTCATACGAATGAGCGCCCATTCCGTTGTAAGATTTGCGGAAAACGATACACTTTGGCGGATACTTTGCGCCGACATGTAAGCGCCGCGCATGAAGATGGACGCACGTATCAGTGCGAAATTTGCgcaaaaatgttcaaacaACTTGCTCATCTGTCTGTTCACAAAAAGGTTCACAATGATGAGCGACCATTCCAGTGTCATTTATGCGAAAAGAACTTCAAACATAAGAACGTGCTTAAATCGCATTTGGCTATTCACGCTAACGTAAGACCTTTTGAATGCGACGTGTGCAAAGCTACATTtgtaagaaaaacaaatttacaaacgCATATTGCATCAGCTCATATGAATGAAAGGCCATACGCTTGTAATATCTGTGGAAAACGGTTTAAACAAATTAGTCATTTAAACGGTCACGTGGTGGTGCATAGCAATTTAATGCCTTATCAGTGCGATTTCTGTGATCGACGATGTAATAGGCTGGACAATTTGAAAAAACATATGCGGCttcatacaaaaaataaagaataa
Protein Sequence
MNSLCNITNKKLCHRGQIDVIDMPIQLTCNYKYFFVYEDQISRFVVLKGLHGNTANEVAIKLLDILTIIGAPQVLQSSNGRKFAKEVVEEIRLLWKDFIILHGEIINNNEQNRDFKNLLESWVEENPTKTWYEALKHIQIFQNSTFRCKNGKIPYDMLFGRNVHEKLKELSNTVNSTENIWTEEEWISLLSNKTGDVKAEGDLQLIASSTFPDIRDVDSLKDYESEDSYSETKDELQRDTPDFNFVNVKSEPLNMHTEDSVFEDESGIDDKTTTVGNQVNLKCKICQKQYMKPGHLKNHMRTHIKGKKFECKLCSKTFHVLNLYEKHIWQSHRQSKLLNSNRNSRSKNLQNETTLDVKTSKLRCSSNSDLNKVQSDKANDSSKVTKSLLKERKKITVDNRSLKINGEPNLECSYCNQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLGSLKIHAQSHKEDYTLKTKDTFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCIICGKRFKQAGHVKSHMLVHTGERKFECSVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACNICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684907;
90% Identity
-
80% Identity
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