Basic Information

Insect: Tetramorium simillimum
Gene Symbol: -
Assembly: GCA_011636635.1
Location: VBVQ01000060.1:7564-8956[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 8.4e-06 0.00099 20.0 2.3 2 23 154 175 153 175 0.97

2 7 0.00018 0.022 15.8 2.8 1 23 181 204 181 204 0.96

3 7 1e-05 0.0012 19.7 0.7 1 23 210 232 210 232 0.98

4 7 1.1e-06 0.00013 22.8 2.7 1 23 238 260 238 260 0.98

5 7 0.02 2.4 9.3 1.1 1 23 266 288 266 288 0.88

6 7 2.8e-06 0.00033 21.5 1.0 1 23 294 316 294 316 0.98

7 7 4.4e-05 0.0052 17.7 0.5 1 21 322 342 322 343 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	8.4e-06	0.00099	20.0	2.3	2	23	154	175	153	175	0.97
2	7	0.00018	0.022	15.8	2.8	1	23	181	204	181	204	0.96
3	7	1e-05	0.0012	19.7	0.7	1	23	210	232	210	232	0.98
4	7	1.1e-06	0.00013	22.8	2.7	1	23	238	260	238	260	0.98
5	7	0.02	2.4	9.3	1.1	1	23	266	288	266	288	0.88
6	7	2.8e-06	0.00033	21.5	1.0	1	23	294	316	294	316	0.98
7	7	4.4e-05	0.0052	17.7	0.5	1	21	322	342	322	343	0.95

Sequence Information

Coding Sequence: ATGCCAGAAGAAACTGAACCGAGGAAATTaTTGAAGAATCAGATCGTCATCCACGATCGAATAATCTGCACCCACAATTATTCCCGGCGAGCATATGAAATGgcaaagtacaaaaataatattaatttaatccaaactaaaacaattaatacacTCGAGGGAGATTCGGAGAATATTGTTCCTTCTGCAGATAATAtagataacaataaattaaccGAACATCTGTCTCCCACAAACACATCTCCAAAAATAATCTCGccaaataaattgataaatgacaagaagaagaaaaatacagaaGACAAAGATTCTAATTCTGTTAGTCAATCAAGTTGCCCGAAAAGGACAAAAGCTACACGGCAGGAACACGCAGTGGAAGTGAAGGAATCTAATGAACATCTGGAGAAAAACATCAAACAGCCCAAGACTAAGAAAGCTGCCTGCACCAGCCTAGCGATGGTCTGCAAATTTTGCAACAAGAAATTTCGCTCGCGGAAAAGCTACTGGGCCCATGTACGCACACACTCGGGTGAGAAATCGTACACGTGCCACGTCTGCGGAAAGCAATTTGTTCAAGGGGGTAGTCTATATTATCACCTGAAACACGTGCACGACGGTGTGAAAAATCACACCTGCGACATATGCGGTCGTAGCTTCGCCATGAAGACCGCCATGGAGGACCATCGACGTATCCATACCGGTGAACGCCCGTACGTGTGCCATACTTGCGGCAAGACGTTCAAGACCAAGGCATCTCTCTATATACACAGCAAAATCCATACGGACGACTTTCCGTACAAGTGCACTTATTGTGCCAAAAGGTTCCGCTGGAGACAACAGATGCTTGGTCACCTGACAGTACATACAGGCGAGAAAAATCACACGTGCGACGTATGCGGCAAGGGTTTCGGCGTGAAGAACGATCTAACTAGGCACAAACGCGTCCATTCCGAGGAGAAGCCGTACACGTGTCAGCAATGCGGCATCAGTTTCGGTCAGAAACGTTACCTCAAAAGTCACGAACGCTTAAAGTTAGGGACGTGTAGGTACTCACAAAGTTCAACAAATCGAATTGAATCTGATTAG
Protein Sequence: MPEETEPRKLLKNQIVIHDRIICTHNYSRRAYEMAKYKNNINLIQTKTINTLEGDSENIVPSADNIDNNKLTEHLSPTNTSPKIISPNKLINDKKKKNTEDKDSNSVSQSSCPKRTKATRQEHAVEVKESNEHLEKNIKQPKTKKAACTSLAMVCKFCNKKFRSRKSYWAHVRTHSGEKSYTCHVCGKQFVQGGSLYYHLKHVHDGVKNHTCDICGRSFAMKTAMEDHRRIHTGERPYVCHTCGKTFKTKASLYIHSKIHTDDFPYKCTYCAKRFRWRQQMLGHLTVHTGEKNHTCDVCGKGFGVKNDLTRHKRVHSEEKPYTCQQCGISFGQKRYLKSHERLKLGTCRYSQSSTNRIESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423157;
90% Identity: iTF_01422442;
80% Identity: -