Basic Information

Insect: Tetramorium simillimum
Gene Symbol: -
Assembly: GCA_011636635.1
Location: VBVQ01001395.1:16279-18516[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00086 0.1 13.7 0.6 1 23 338 361 338 361 0.96

2 10 6.5e-06 0.00077 20.3 0.5 1 23 367 389 367 389 0.99

3 10 1.2e-07 1.4e-05 25.8 0.3 1 23 395 417 395 417 0.99

4 10 0.28 33 5.7 5.4 1 23 423 445 423 445 0.98

5 10 8.6e-06 0.001 19.9 0.3 1 20 451 470 451 471 0.96

6 10 0.023 2.7 9.2 2.3 1 23 480 500 480 500 0.94

7 10 1.4e-06 0.00016 22.5 0.5 3 23 508 528 507 528 0.98

8 10 0.00014 0.016 16.2 1.4 1 23 534 556 534 556 0.98

9 10 0.0015 0.17 12.9 3.4 1 21 562 582 562 585 0.96

10 10 0.067 7.9 7.7 4.0 3 23 593 614 591 614 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00086	0.1	13.7	0.6	1	23	338	361	338	361	0.96
2	10	6.5e-06	0.00077	20.3	0.5	1	23	367	389	367	389	0.99
3	10	1.2e-07	1.4e-05	25.8	0.3	1	23	395	417	395	417	0.99
4	10	0.28	33	5.7	5.4	1	23	423	445	423	445	0.98
5	10	8.6e-06	0.001	19.9	0.3	1	20	451	470	451	471	0.96
6	10	0.023	2.7	9.2	2.3	1	23	480	500	480	500	0.94
7	10	1.4e-06	0.00016	22.5	0.5	3	23	508	528	507	528	0.98
8	10	0.00014	0.016	16.2	1.4	1	23	534	556	534	556	0.98
9	10	0.0015	0.17	12.9	3.4	1	21	562	582	562	585	0.96
10	10	0.067	7.9	7.7	4.0	3	23	593	614	591	614	0.97

Sequence Information

Coding Sequence: ATGCACGACGCGATGATTAGCATGCAGACGGTCTTGAACAATGTAACCGGTCCCGAGCAGCCGCAGGAGGAAGTTCAGCTGACCGAATTGCGGCCAGTGAACATCAATGAAACTATCTCCAAGGATGCCAACGAGACCGACGCTCTCAGGGCGCTCAGGAGTCTTTCGGGCAACTGCGGCGATGGCGAAACCTTTGACTTGGAATTCAATTTCTGCAAGAACGTCGAACAGTCGGAACGCCAGGCTGGCAAGCATCGACGAGCAGAGGCTCGTCGGAAAAGAACGGAAGATGCCAAAAACAATGTTAAAGACATAGACTtcgataaagagaaaaatactgaGATAACGGAGAAGAAAGTAAGTAACAACAAAAAGGTTGCTCGCGTGAAAGCACCGAAAAGGAAGCTGGCAAAGTCGAGCAAAAAGACAGACAGGGAGAAcggaataaatgaaaaattgattaggAAGAATACCGTCAAATACGAAGAGGACGACGACGAACAATCGTACTTggatttggaaaaaaaagactgTTTTAAGGACGAAGTTTACGTATATAGACGGGAACCGCTGGATCCGTGCTCGAGTTCGGAGCCAGAGGAATCAGAAGCAACGAATCACAAGGATCTTTGCGAAGATTATCCTACCACAGATGGAGAATTGTTTgatgaaaagagaaaactcACTAGAAAAACCTCTAATATAGAtgacgagaaagaaaaacgcaAGTCTAAAGTAGATGGCATTactgagaaagaaaattccgAAAAGGAGCTCAGGTTGAGGATCGATGCCATCATTCAAGAGAATTACCTGCTGGAGCGCGAAAATAACAACGTCGTTGGTTCTGACGGACTGAAAATCGCGAAGCACATTGGTGCCTCTTCCGCTGCTGCGTCGGTCAAAGCGGGTAACAGCAACGGCTCTCTGTGCAACGTGGTagagaagaagacgaagaggaAGCGGACTGATCAGACCAGACAATTGAAAGACCAGATTTCTCAGAAGAAGTATTGCTGCGTCGTGTGCGACGCGCGATTCAAGGGTAGCGGTGGTCTGCGGAATCACTACAAGGTGGTGCACGGCGCCGGGCCGGTGTTCAAGTGCGACGAATGCGGCAAGGAGTTTCCGCTGAAGGAGCGACTGAAGCTGCACGTGCGCACGCACACCGGATTCAAGCCGTACAAGTGTCCGGAGTGCGATAAGAGCTTCGCGCGGGGCGGTCAGCTGGTGCAGCATCGTCGCACGCACAGCCAGATCAGACCATTCCACTGCAAGCTGTGCTCCAACACCTTCACGTGCGCGGCCAATCTGTCGCTACACCTGAAACGTCACAACGGCCAGAAGGATCACAAGTGCGACCTGTGCGGGCGCGCCTTCGTGCGCCGCGACGCCCTGAAGAAACACCTCGAGTGCCTGCACCGCGACGTCAAATCCTTCCTCTGCGCGATCTGCAACAAGACCTTCAAGGGTCACCTGCCGCAGCACATGAGGACACACGCGCGCGACCGTCCGCACGGCTGTGCCACGTGCGGCCAGCGCTTCGCCCAGAAGTCCCAGCTGACTGTACACCAAAGGACCCATTCCGGCCAGCGACCGTTTCGCTGTCTGGTCTGCTGGCAAGCCTTCGCCCATTCAACCGCCCTGAAGCTGCACACCCGACGTCACACTGGAGAACGGCCGTTCAAGTGTTCCGAGTGCAATGCCGGCTTCACTCAACTCCCACATTGGAAGAAGCATATGAAGTGCATACACGGTAGGAACGATCCATACGGTTGCAAGCGTTGCAAGAACTTTTTCAGGATTAAGAGCGACCTGGAAAACCACGAGAAGACCTGTCATCCAGAGATGGAAGTGGAGGACGACGATAGCAGCGTTCCCAGTAGACCGGCCGGCGCTTCCGAGACTGTCGAGAAGAATTCTGTCACCGCAAAGTACAAGCTGATGACGGTGGAGAAGATGCGACTGCTGCTGGCGGTCCTGCTGAAGAGGATCAGCAAGCAAGAACGGCTGGACGAGCTCGGCTTCGGCAAACGTCTCATCGACGACGTTCTTCAGGACTCCCTGCTGTCCGCTGGGAAGGAACCGGTCGCGGGGAACGGTTTGTCCGAACTCGAGACTCTCACCCGGAATCTAGAAATCTTTCTGGAATGGACAGTGCCGAAGGAGCACTGGGAGAATTTCCGTAAGATGAAAAAGTCGCCCGAAGACATTTTGGAAACGCTCACAGCTACGTAA
Protein Sequence: MHDAMISMQTVLNNVTGPEQPQEEVQLTELRPVNINETISKDANETDALRALRSLSGNCGDGETFDLEFNFCKNVEQSERQAGKHRRAEARRKRTEDAKNNVKDIDFDKEKNTEITEKKVSNNKKVARVKAPKRKLAKSSKKTDRENGINEKLIRKNTVKYEEDDDEQSYLDLEKKDCFKDEVYVYRREPLDPCSSSEPEESEATNHKDLCEDYPTTDGELFDEKRKLTRKTSNIDDEKEKRKSKVDGITEKENSEKELRLRIDAIIQENYLLERENNNVVGSDGLKIAKHIGASSAAASVKAGNSNGSLCNVVEKKTKRKRTDQTRQLKDQISQKKYCCVVCDARFKGSGGLRNHYKVVHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQIRPFHCKLCSNTFTCAANLSLHLKRHNGQKDHKCDLCGRAFVRRDALKKHLECLHRDVKSFLCAICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCSECNAGFTQLPHWKKHMKCIHGRNDPYGCKRCKNFFRIKSDLENHEKTCHPEMEVEDDDSSVPSRPAGASETVEKNSVTAKYKLMTVEKMRLLLAVLLKRISKQERLDELGFGKRLIDDVLQDSLLSAGKEPVAGNGLSELETLTRNLEIFLEWTVPKEHWENFRKMKKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126190;
90% Identity: iTF_01421745;
80% Identity: -