Tsim023019.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- -
- Assembly
- GCA_011636635.1
- Location
- VBVQ01000196.1:57268-62278[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.17 21 6.4 1.4 1 23 298 320 298 320 0.91 2 13 0.014 1.6 9.8 2.1 1 23 325 349 325 349 0.92 3 13 0.00038 0.044 14.8 0.4 1 23 386 409 386 409 0.97 4 13 1.8e-05 0.0022 18.9 4.0 1 23 415 437 415 437 0.99 5 13 0.0011 0.13 13.3 0.2 1 23 446 469 446 469 0.96 6 13 1.2e-06 0.00014 22.6 4.6 1 23 475 497 475 497 0.98 7 13 1.4e-05 0.0017 19.3 2.3 1 23 503 525 503 525 0.97 8 13 0.00018 0.022 15.8 2.0 1 23 531 553 531 553 0.96 9 13 1.9e-09 2.2e-07 31.5 0.3 1 23 559 581 559 581 0.99 10 13 5.4e-06 0.00064 20.6 3.3 1 23 587 609 587 609 0.98 11 13 4.5 5.3e+02 1.9 6.2 2 23 616 637 615 637 0.95 12 13 2.5e-06 0.00029 21.6 1.5 1 23 643 665 643 665 0.98 13 13 2.4e-07 2.9e-05 24.8 1.5 1 23 671 693 671 693 0.98
Sequence Information
- Coding Sequence
- ATGGTAGACGTGCATCTGTACGACTCGACGATCTGTCGACTGTGCGCGGCGGAGAACGGTAACGAGCATCTATTCGTCAGCGAGGCGGGCGAGTCGGATCTCAGCTCGCTCGTGAATCGTTACCTGCCACTGAAGATTCATGACGATGGAAAATTACCACGGACAATTTGCCCGGGTTGTAACATCCAACTGGAGTCGACGATGCAATTCTTTGAATTGCTTGTCTCTGGTCAGCGCAAGATACGTGAACTCTGGAAACAGCAAGTGGAGCAGCAGCGCAAGGCAGACCGCCTGCGCAACAGAAAGGAAAATGTGGAGCTGGGAACAGAAGGAATGGAAGTGGATAATATGGCTCAGTATAATGAAGAGGAGCAATACGAACAGCAAATGATTATTAAGaTTATGCCAGATGGATCTATGTATGCGGCAGAACATGAAATGAGTTTACAAATGGAAGGCTTGACTAAGCCAAGAAGAAAGCGCGGACGTCCACCCAAAGTTCATACAGAGACAGATTCCATggtGGAAAAAGAGAATCCTGGGGAAGCTGCGAGTCAAGGTGAGGAGGATAAgcaggaagaagaagaagaagtggATGGTGATGGTAGACGCAGGAGAAAGCGCAAAGTTCCCAAGAGGTTTCTAGAAGCAGTACAGGGAAAAGAATtggaaagaatatttaaggAAGAAGGTGTGATCGATGAGGAAGATAATGAGGATTCTGAAGTGTTTGATGATCCAGAAGATTTGTTAAAGACTTCTACTCAGGATGGTCAAGaagAAGTGATAGGTCATCTTGAAACAGAAGAAGGCACAGACTTGGGTGAAGTGGTAATTGTGAACCGTGGACGAATAcgatcaaaatcaaaattacgccgtcgaaaaaataagtttacatGCCAACTCTGCGGCAGGGGTTTCCTACAACGTAGCAGATATATAGtacataaGAGTTTCCATGCGGGTACCAATCACGAATGTGCACAATGCAAGAAGCTATTTGACAGTAAAGAGAGTTTggcattacataaaaaaacgACTCAACATAGCTTAAATCCCATCGAAGAAAATGTCGAAGTACAGGAGTCGCATAACGCAGAGCAAGACGCCTCCACGTTAAAACCCGATATAGCGGAAGAATCcagaaattcaatttacacGTGCGAAATTTGCAACAAGCAATTTGGATTGAAACAAGAATACGAATTGCATATTAGATTGGAGCATGAGGTTCAACCGAAGTTCAAATGTAACATTTGTAACAAGAATTTCCTGAATCACTCAAATTTGAAAGTGCACATGACAACACACGCGaaaaCTAAATCGGATAAGGACTACGCTTGTGATATCTGCGGCAAGGTCCTAAACCATCCGAGTTCTGTTTTGTATCACAAGGAAACTGAACACAACAATGGGCGTCGTTTCGTCTGTAACAAATGCAACAAAAGCTTCAAACACAAGCAGTTGCTTCAGCGGCATCAATTGGTGCATTCAGATAATCGACCGCATGTTTGTAAGTCTTGTAACGCCAGTTTTAAAACGAAAGCAAACCTGATTAATCATCAGTCCACCCACACGGGGCAGAAAAAGTATCTGTGTGAGATTTGCAATCAACAATTTGCGCATAAGACTAGTCTTACTTTGCATTACAGATGGCACAGCGGTCAAAAGCCATACAAATGCGAAGAATGCGGCAAGAGCTTCTCACAAAATGGCAATTTGCAAGAGCATATACGCATTCACACCGGCGAAAAACCATACAGTTGCGATTTCTGCGGCCGGAAGTTCACTACGTCGTCGCAATTCAAATTGCATGTAAAACGGCATACCGGCGAGCGGCCGTGGAAATGTGAGTTTTGTTCGAAGAGCTTTTTGCACAAGGATACATGGAAATGTCACGTGCGTCGGCATAAGGGAGAACGACCGTTTCAATGCAGCCAGTGCAACCGTCGATTTACGGAGCAGTGGGCACTGAAGAAACATATTCGTTTGCACACTGgtGAGAAACCGTATTCTTGCGATGTGTGCGGCAAAGCTTTTGCCGACTGTTCAAATCTGACAAAGCACAAAAAGGTACACAGGGAAAATAAGACGGTAACTGTGAACAGGTCGGAAGGATCTCCGATCGGCGAAGTATGGCAGATTCTGCCTAATTCACGAGAAGCTGACGAACAGATGttcaataatcaaataataaccACTGACGAGACATCTAATGATGGAAtccaacaaataatttatgtatcttaTCAGGATCCTAACGATCCTAATCAATCACGAACATTGCATTTGGTTGACGCCAACATGATCAAGAACAAAGATGAAATAGTGACGAATGCGAACTCCTTGTCACGTTTGAATATAGAGAACGACGAAATAATTaccgataaaattataaataatgcagcCAGCAACAATGAAGAGCAGTCAGAGATCGAATTATCAGAATCGGATTTACAGTTGCAGattacgGATGAACACGGAAATCCGATTCCGTTGTCTATTCAAGAAGCTCGACAGCTTTTATCGCAGGGGCAATTTGTCAATCAATTGAACGACAGCCAGGTCATCAGGGTTCACCCTGGAATGTTCGCGCAACAACTCCAAGCCTTAAATATCCATGTTGACGAAGATACTATAGAGGAAAATGGAATTATGGTGCGTTcaaatacaaacaaaaatatagaaacaataTCGGCAATTCAAGCTGATGCGGAAGCAATTGTCCAAGCGCTTGAGgATGAGGATACTGACGCCACGGCAGTCGCGACGATCAATCAATTGGGAAATATCGAGCAGACTGGACTCGCGGATGGTGAACAAGCAATCGAATTCATGACTCAGGATGGACAGAAAGTTCGTGTCCTAACATCATATCCCGTCGATCCGATGCAGCTTGCTTCAGAGTACCTGACTATTGtgtag
- Protein Sequence
- MVDVHLYDSTICRLCAAENGNEHLFVSEAGESDLSSLVNRYLPLKIHDDGKLPRTICPGCNIQLESTMQFFELLVSGQRKIRELWKQQVEQQRKADRLRNRKENVELGTEGMEVDNMAQYNEEEQYEQQMIIKIMPDGSMYAAEHEMSLQMEGLTKPRRKRGRPPKVHTETDSMVEKENPGEAASQGEEDKQEEEEEVDGDGRRRRKRKVPKRFLEAVQGKELERIFKEEGVIDEEDNEDSEVFDDPEDLLKTSTQDGQEEVIGHLETEEGTDLGEVVIVNRGRIRSKSKLRRRKNKFTCQLCGRGFLQRSRYIVHKSFHAGTNHECAQCKKLFDSKESLALHKKTTQHSLNPIEENVEVQESHNAEQDASTLKPDIAEESRNSIYTCEICNKQFGLKQEYELHIRLEHEVQPKFKCNICNKNFLNHSNLKVHMTTHAKTKSDKDYACDICGKVLNHPSSVLYHKETEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSDNRPHVCKSCNASFKTKANLINHQSTHTGQKKYLCEICNQQFAHKTSLTLHYRWHSGQKPYKCEECGKSFSQNGNLQEHIRIHTGEKPYSCDFCGRKFTTSSQFKLHVKRHTGERPWKCEFCSKSFLHKDTWKCHVRRHKGERPFQCSQCNRRFTEQWALKKHIRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHRENKTVTVNRSEGSPIGEVWQILPNSREADEQMFNNQIITTDETSNDGIQQIIYVSYQDPNDPNQSRTLHLVDANMIKNKDEIVTNANSLSRLNIENDEIITDKIINNAASNNEEQSEIELSESDLQLQITDEHGNPIPLSIQEARQLLSQGQFVNQLNDSQVIRVHPGMFAQQLQALNIHVDEDTIEENGIMVRSNTNKNIETISAIQADAEAIVQALEDEDTDATAVATINQLGNIEQTGLADGEQAIEFMTQDGQKVRVLTSYPVDPMQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128422;
- 90% Identity
- iTF_01421717; iTF_01423091;
- 80% Identity
- -