Tsim025558.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- -
- Assembly
- GCA_011636635.1
- Location
- VBVQ01000693.1:30002-33067[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-10 1.3e-07 31.7 0.1 6 38 24 55 19 61 0.87 2 2 6.8 5.5e+03 -2.3 0.0 30 38 83 91 83 96 0.83
Sequence Information
- Coding Sequence
- ATGGTACCTGACTACGAGGCTTATTTACAACGTGCAATGAAATCGCAAATGCTTTTACGCGAAAATGCGAGGAAAGCCGTTAACGCTGTCACCAACGGAATGTCTTTGAGGAAGGCCGCAACAATGTACTCCTTGTCcaaatcaattttacatcGATACTGCAAGAACGATGCACGCGCGGTGAACTATCTGAATTGCCAGAAGGTAACATATCCGTGCAAGAATTGCGGCAAGGTCTATAGCTACTACTCAAGCCTGGCCAGGCATCTGAAGCACGAGTGCGGCGTGGAGCCCAAGTTCCTCTGTCCCTTGTGTCCTTACAGGACGAAGCACAAGTCGAGCCTGAACACTCACCTGAATGGCAGGCATATGAAGCTATTAAGCGAGTTTTATACTTTGCCTAATGGCAACAAAACGTCTTCAACGGATGGGAATTAA
- Protein Sequence
- MVPDYEAYLQRAMKSQMLLRENARKAVNAVTNGMSLRKAATMYSLSKSILHRYCKNDARAVNYLNCQKVTYPCKNCGKVYSYYSSLARHLKHECGVEPKFLCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYTLPNGNKTSSTDGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423973;
- 90% Identity
- iTF_01423973;
- 80% Identity
- iTF_01423973;