Tpar012396.1
Basic Information
- Insect
- Tetramorium parvispinum
- Gene Symbol
- -
- Assembly
- GCA_011638315.1
- Location
- VBVR01002093.1:7975-12010[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 9.1e-05 0.011 16.7 0.3 1 23 690 712 690 712 0.97 2 7 0.00053 0.062 14.3 2.4 1 23 768 790 768 790 0.97 3 7 0.00049 0.058 14.4 0.5 1 23 873 895 873 895 0.98 4 7 0.14 17 6.7 0.0 1 23 911 933 911 933 0.97 5 7 0.00035 0.042 14.9 0.1 1 23 971 993 971 993 0.98 6 7 0.016 1.9 9.7 0.1 1 23 1012 1034 1012 1034 0.97 7 7 3.6e-05 0.0042 18.0 0.1 2 23 1040 1061 1039 1061 0.97
Sequence Information
- Coding Sequence
- ATGTCGGACAAGCACGAGTCGCGAAGTCTGGCCGAGCGCTGCCGAATCTGCCTGATCGCCCACGGCTGCATGACCAGTCTGCAGAGTGACCGTGTGGAAGCCAAGCTCAAGGATTTGACTAAGTGCACCTGCATCGACATCAAGTATGAGGAAAATCTGCCAGGGGTTGTGTGTcatgtatgtttatataagCTGAATATGTGGAGCGAGTTCAAAGAGCAGTTTATACAGTCCAATAAGGTCCTCCTAGAACAATTGGAGATATCTGAAGTGTCTGATAATGCTATTAAAGATTCTTCCAAGGATGAAAGTTGTACAACAAAGGATGGGGAGAGGAAACGTAAAAGTGGCAAAGATAACATTTCTGACACTGAGAAGAAAAAATCAAGATTAGATGTATCTTCATCGGAAGTCGCGAATATTACTTGTGACACAGCAATTATATTGGAgacaatatatatatcgtccgatgaaaatgataaatcaagTTCACGTAAGCCAAAGAAGAATGCGAAGAACGGCGAGGAGTCTGCGGAGAGTAAAATGTATTCCGGACCAAGAGCTAGATTGTTACCTGCGAGGCGCGGGAGAAATATCGAGCGGAGGAAGGCATCTACGAAGCGTTGGGTAGAGAGGAAGAAGGCGCTTATAGCTTCAATTGGCGAAACCGTATCCGACACGGATTCCATAGCCTCTGACGACGTGCAATTGTCGCCCGTACAGAAGGCTCGAGCGAAGACCAACGCGGATAAGGAACTGGAGAAGCAGAAGAAAGTAGCGAAGGTGCTGAAAAGTCTAGAGACGAATCTTACGGAGAAATATATCGCGTTTCGTGACAAAGACACGGATTCTGACACGCGCAGAACGAGATTGAGCAAGGAAGCGAATCCCTTGCAACAGCGAAACAAAAATTCCTTGCTGAACCAAATCGGGAAGAAGAGCGTTAGTGAGAAATATGGATCGTCTCTGGACAGCTCGATGGAACAAGATAATTCGCCGACTCCGTTAACGAACAACGTTATGCTGGACGGTCACGCGAGAAACTCCAACATGCAGGCTGATGAGCAAGCTTTTACACCTCACTCGGTGCAATCCGAGATAGTGATCGATGACGTCACGTACGCTGTAACGTCCACGTTGATCCTCACCGCGGATTCGTCGAATTATGATAAAACGgacttgtataatttaatgaaggATTCTAAGAGCCTTAGTCCTGACGAAAGTAATCGACAGAAAAATACCGATATTATCAAGGCAGTTAATCTGTGTCCCGTGCCCAATGCAAACAACAAATCTAACAGTAAGTTCAGGAATTCTAAAAACAATAACAAGTTTGTCGAAAGATGTATGAAGATCGAAGTAGAAGGTAATGAATTGTCACTACTGAAACGTTTACAATTCGAATTGGCGGATTTCGTGGAGAAAGAAATGAAGCACAAGCTATTCGATACGAGCGACGGCGTCGCGAAAACCAATACGGACAGCATCATAACTGGTGGCAATGCCACCTATTTGTACCAGAATCTCGACAAGACGTTGAAAAGCATGATAGaatccaatataaaaaaaaatatcgagtcTTCTATAGTGAGCCAAGTGGACGACGCATGCGGCCAAGGATCCACAAAGATTTCGCCAATGTTGGCAAAGATGGTTACGAACTTACCCAGATATCAAccgaaaattatgttaaaacgCTTAGATATAGCAAAGGAGAGTAAGCACTATAACATCAACAATGCTCACGCGTTGATTCTAGGTGTGCCAAGAGGCAAGCTCGCCGGACCGTTCAGCGCGATCACTCGTAAACGTCAAAGCGTACTTCCAGCGAGATACTGCGATTACAATGTCAGTGCATTGGACTCTGATTCCGATGCACTGGATGATAATGATGACGATGAAGATGCCATTCAGGAAACGCCCAAGATAACTAAGTCAAGAACATCCAATATGGTGACGAGAAAGTCAGCAGTCGTTACTGACAAATCGAAGGAAAACAAACAAAACGAACAGAAGGGCAATTATGAGAAGTCTACGAAGATAGAGGGTGCCATAGCGGAGAATCATATGTGCGGGGTGTGTGGTCTCACGTTTCCAACTCGCAAAGACGTCGAGATACACGTTCGTACTCATAAAATCACATTAGGTGTTTCTGCCTGCACGGTTGTGCTGCCAAACGAGAATGCGAGCTCGTCGCAGAAGCCGCGACCGGGCAAGCAGAAAATGAAGCGCTGCAAGAGGTGTCACGAGATAGTCGAGGCGCGTTTCGTGAAGTCGCACGTGTGTAAGACGGCGCTTCACAAATGTTACGTCTGCGACTCCATGTTCCGCACGAAGAACCTTTTGGCGAAGCACTTGGAGAGCCACGATCAATCGGAATTCAATGTAATAAACGCGATCGAGAACAAGAAGTTTAACAATGCTGACACGTTGCTGAAGATTCTATCGGTTGCTTCCACTTCGCCGCAAAAGGACCAGGCCCAGGAAACTGAAACCACGGTAAAAATGCCGACTGGTGTAAACGATAAGAATGATATCCAGTCCGATAAAATAAGTAGCACAGGCGTGAAGCTGGATAGCGCTGAAAATATCATGAGAAAGCCTAAAGAAACCTACACCTGTTTCGTGTGCGACAAAATTTTCACGGACGAGGAAATACTGAAGGATCACTTACAGAAACATTGCGACGATTTGAGCGAAGGAGAGCAAAGCAATAACAAGGAGCAGTATCAGTGTGCTATTTGCGGCAACGCTTTAGAATCGGATCAAGCGTTAGAAGAACACGTTAGTAAACACTTGTTCGATGATGAGGACGACAACCCAAATCTGATTAGCATAGACCAAAACAATGATAATAAGGATAACAAGGATAACAAGGATAATAAGAAGTCGAAGGAAAGCGAGACATATCAGTGCGGTCAATGCTCAGAGACGTTTGATTCGGAGATGCTGCTGGAGATGCATATGCAGGCGCACGAGGAAGAAGTCGCGATAGCGGAATGGGAGAGGCACGGAATGAAAGACTATCAATATCAATGTTCGCTTTGCGATGAATTGTGCGATACGGAAGAGGAATTAGCGGAACATTTGGACATACATAACGCAAACGCGCAAGTATGTCAGTTGTGTGATAAGCCATTCCGCACCCTGGAGGATTTACAAGAACATGTTGCAACTCATTGA
- Protein Sequence
- MSDKHESRSLAERCRICLIAHGCMTSLQSDRVEAKLKDLTKCTCIDIKYEENLPGVVCHVCLYKLNMWSEFKEQFIQSNKVLLEQLEISEVSDNAIKDSSKDESCTTKDGERKRKSGKDNISDTEKKKSRLDVSSSEVANITCDTAIILETIYISSDENDKSSSRKPKKNAKNGEESAESKMYSGPRARLLPARRGRNIERRKASTKRWVERKKALIASIGETVSDTDSIASDDVQLSPVQKARAKTNADKELEKQKKVAKVLKSLETNLTEKYIAFRDKDTDSDTRRTRLSKEANPLQQRNKNSLLNQIGKKSVSEKYGSSLDSSMEQDNSPTPLTNNVMLDGHARNSNMQADEQAFTPHSVQSEIVIDDVTYAVTSTLILTADSSNYDKTDLYNLMKDSKSLSPDESNRQKNTDIIKAVNLCPVPNANNKSNSKFRNSKNNNKFVERCMKIEVEGNELSLLKRLQFELADFVEKEMKHKLFDTSDGVAKTNTDSIITGGNATYLYQNLDKTLKSMIESNIKKNIESSIVSQVDDACGQGSTKISPMLAKMVTNLPRYQPKIMLKRLDIAKESKHYNINNAHALILGVPRGKLAGPFSAITRKRQSVLPARYCDYNVSALDSDSDALDDNDDDEDAIQETPKITKSRTSNMVTRKSAVVTDKSKENKQNEQKGNYEKSTKIEGAIAENHMCGVCGLTFPTRKDVEIHVRTHKITLGVSACTVVLPNENASSSQKPRPGKQKMKRCKRCHEIVEARFVKSHVCKTALHKCYVCDSMFRTKNLLAKHLESHDQSEFNVINAIENKKFNNADTLLKILSVASTSPQKDQAQETETTVKMPTGVNDKNDIQSDKISSTGVKLDSAENIMRKPKETYTCFVCDKIFTDEEILKDHLQKHCDDLSEGEQSNNKEQYQCAICGNALESDQALEEHVSKHLFDDEDDNPNLISIDQNNDNKDNKDNKDNKKSKESETYQCGQCSETFDSEMLLEMHMQAHEEEVAIAEWERHGMKDYQYQCSLCDELCDTEEELAEHLDIHNANAQVCQLCDKPFRTLEDLQEHVATH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423908;
- 90% Identity
- iTF_01421788;
- 80% Identity
- -