Basic Information

Insect: Tetramorium parvispinum
Gene Symbol: -
Assembly: GCA_011638315.1
Location: VBVR01006780.1:6675-7751[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.002 0.23 12.5 2.7 2 23 83 104 82 104 0.97

2 9 6.7e-05 0.0079 17.1 2.4 1 23 106 129 106 129 0.96

3 9 0.00037 0.043 14.8 1.5 1 23 134 157 134 157 0.97

4 9 8.3e-05 0.0097 16.9 2.1 1 23 163 186 163 186 0.95

5 9 0.00044 0.052 14.6 2.0 2 23 193 215 192 215 0.95

6 9 0.00063 0.074 14.1 0.2 1 23 220 242 220 242 0.97

7 9 0.00026 0.03 15.3 0.5 3 23 250 269 249 269 0.98

8 9 2.3e-06 0.00027 21.8 0.1 1 23 275 297 275 297 0.97

9 9 0.00036 0.042 14.9 0.4 1 23 303 325 303 325 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.002	0.23	12.5	2.7	2	23	83	104	82	104	0.97
2	9	6.7e-05	0.0079	17.1	2.4	1	23	106	129	106	129	0.96
3	9	0.00037	0.043	14.8	1.5	1	23	134	157	134	157	0.97
4	9	8.3e-05	0.0097	16.9	2.1	1	23	163	186	163	186	0.95
5	9	0.00044	0.052	14.6	2.0	2	23	193	215	192	215	0.95
6	9	0.00063	0.074	14.1	0.2	1	23	220	242	220	242	0.97
7	9	0.00026	0.03	15.3	0.5	3	23	250	269	249	269	0.98
8	9	2.3e-06	0.00027	21.8	0.1	1	23	275	297	275	297	0.97
9	9	0.00036	0.042	14.9	0.4	1	23	303	325	303	325	0.97

Sequence Information

Coding Sequence: ATGGTAACGcgaatttttgtctttttatgttttagaaTGGATCCGTTGAACGTTGAGTTCAATGTTCAGAAACTATTCGCTAGAGTCGAATGTGAATGGtcaaaaagtgaaaaatcaACAGAAAAGTTAACACAACATGAAGGGCGATTacaagaaaagataaatgcaACCCTAACGAAAGATGAGCTTAATCTGCGGATTGTAACTGAAGAGAAtcgatcgattaaaaaaaagacaatgtGTGTAGAATGCGATCATTGTCGCCGAAAGTTCTTGAAGAAGAGCAACCTCGCCGAGCATCTGAAGCAGCATAGGCACAAATGCACCGATTGTCCAAAGACCTTCAGCCTTCGACGTTATCTAGTCTCCCACGTCGAAAAGAATCATCGGCAGCAGATGTACGAGTGCAGCGTATGCAAGTACAAAAGCAACAATAAAGGTACCCTGAAGAATCACTATATCCGGCTGCACACGAGCAACTATGACTACGCGTGCGATACGTGCGGTAAGCAGTTCAAGATAAAGAAGGCCTTGAATCACCACGTGAAGCAGAATCATAGTGAAGCTCCGCCGATCGTGTGCGACGTTTGCGGTCACTTCAGCAAGAACCTCCACGCCCTTAAAGCTCATATGAAGTACAGGCATTACAAGCCGGAGTTTGTTTGCCGGATATGCCGACGAGGTATGACGACACAAGAGAATTTAGAGCAACATCTTATGTGGCACGAAACCAGGGAGAAGGTACTCTGTCCGACTTGCGGCAAGAGATTCAGGGGACGCGATCTGGATTCGCACATGAGAGTGCACACCGGGGTGAAGCCGTTCCCTTGTCCTGTCTGTGGAAAGACTTTTCGACGGCAAACTGCTCAAGAGCAACATGTGTTAATCCACACTGGAAAGAGACCCTACATTTGCGATATTTGTGGTCAAGCGTTCGCCCAAAAGCCCGGCCTGATCTGCCACAGGAAGAGACATCCTGGTCCGTTGCCCCCGTTACCTGTAGTCTCTATCAAGAACATTGTCACGGAATTCACGAAAGAATATGCGACGAAAAACGCAATCATAAAGGttgaataa
Protein Sequence: MVTRIFVFLCFRMDPLNVEFNVQKLFARVECEWSKSEKSTEKLTQHEGRLQEKINATLTKDELNLRIVTEENRSIKKKTMCVECDHCRRKFLKKSNLAEHLKQHRHKCTDCPKTFSLRRYLVSHVEKNHRQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDTCGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYATKNAIIKVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01354815;
90% Identity: iTF_00015577;
80% Identity: -