Basic Information

Insect: Tetramorium parvispinum
Gene Symbol: salm
Assembly: GCA_011638315.1
Location: VBVR01001958.1:13408-25990[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.2e-05 0.0026 18.7 1.0 1 23 336 358 336 358 0.98

2 11 9.3e-06 0.0011 19.9 2.1 1 23 364 386 364 386 0.98

3 11 4.2 4.9e+02 2.1 3.3 3 23 752 772 751 772 0.92

4 11 4e-08 4.7e-06 27.3 0.6 1 23 778 800 778 800 0.97

5 11 5.6e-05 0.0066 17.4 2.6 1 23 810 832 810 832 0.98

6 11 5.2 6.1e+02 1.8 0.2 1 7 1137 1143 1137 1145 0.90

7 11 0.011 1.3 10.1 3.2 2 23 1160 1181 1159 1181 0.97

8 11 0.029 3.4 8.9 1.0 1 14 1187 1200 1187 1201 0.92

9 11 1.5 1.7e+02 3.5 0.1 9 23 1315 1329 1313 1329 0.90

10 11 5.4e-07 6.3e-05 23.7 2.1 3 23 1395 1415 1393 1415 0.96

11 11 1.9e-07 2.2e-05 25.2 0.9 1 23 1421 1443 1421 1443 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.2e-05	0.0026	18.7	1.0	1	23	336	358	336	358	0.98
2	11	9.3e-06	0.0011	19.9	2.1	1	23	364	386	364	386	0.98
3	11	4.2	4.9e+02	2.1	3.3	3	23	752	772	751	772	0.92
4	11	4e-08	4.7e-06	27.3	0.6	1	23	778	800	778	800	0.97
5	11	5.6e-05	0.0066	17.4	2.6	1	23	810	832	810	832	0.98
6	11	5.2	6.1e+02	1.8	0.2	1	7	1137	1143	1137	1145	0.90
7	11	0.011	1.3	10.1	3.2	2	23	1160	1181	1159	1181	0.97
8	11	0.029	3.4	8.9	1.0	1	14	1187	1200	1187	1201	0.92
9	11	1.5	1.7e+02	3.5	0.1	9	23	1315	1329	1313	1329	0.90
10	11	5.4e-07	6.3e-05	23.7	2.1	3	23	1395	1415	1393	1415	0.96
11	11	1.9e-07	2.2e-05	25.2	0.9	1	23	1421	1443	1421	1443	0.98

Sequence Information

Coding Sequence: GAAGAAAATGACTTTACATCAGACGGCGAAGAGAGCGGTGGTGGAGGAGGAGGTGGCGAGGAAGCCGTGGATCTCACAGCGACGAGATCTCATCAGGGCGACGATGATCCTATGGAAGAGGATGAGGAAGAAGGTATCGACGAGCAAGACGAGCAGGATGAGGACGAGGAGGGCTCGCGCAAACAGATTCATCATCGGCAAGACGCGgagaacaataataattttgtggaGAGCGGTTTACCTACCGCAATATTCCCGCCCGCTGGAACTAGTCACGTCACCCTCGAGGCCCTTCAGAATACAAAAGTGGCGGTCGCCCAGTTCGCTGCCACTGCCCTCACCGGGGCGGATAGCGAAGCGGCGCTGCAGGACTTGGCGTTTCTGGAAAACACGCTGTGCACCCTTCAGAATCAACAAGTATTGCAATTACAGCTGATTCGGCAGCTACAGCAGCAATTGCTGATCACACACGGGCAATCGGTAATACAATCGTCGGCGACGGAGCCAACTGACAGCAAGGAGGCCTCGTCGTCTCCCATTATTCATCCGAAACCATTGTCAAGTCTCGCGTCACCTCCTTCTTCTCGTCCACCGAGTCATCATCAGCAAACGTCACCGGCGCCGCTGACCCCGAATCTACTTCAGGAACGACCGACGTCGACGAGCAGCGCCTCGCCTTTGAATCTACCCCTGTCTTCGTCCAGCGCGACGTCAACTGTCAGCACGACCACCAGCAGCCAAATGCCGTTGCCGCATCAAATGCCGCCGCTTTGCTCGATAAGCGCCTCCCTTGCTTCGTCGATCATAACGAATACCGATCCGCCGCCGCTCCACGAGCCAAACACTCTGGATATTCTTCAAAAGCGTACCCAGGAGGTATTGGATAACGCGAGTCAAGGACTGGCCAACAATTTGGCCGACGAGCTCGCGTTTAGAGGCAAGGGCTCGCGACTGTCTCCTTACGATTCGAAATCGAGCGGCGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGCGGCAAAGTCTTCGGTAGCGACTCGGCGCTACAAATCCACATACGATCCCACACAGGTGAGCGACCCTTTAAGTGCAACGTATGTGGAAGTCGGTTCACGACCAAGGGCAACCTGAAGGTCCACTTCCAAAGGCACACGGCCAAATTTCCACACGTTAAGATGAACCCGAATCCCGTTCCAGAACATTTAGATAAATACCACCCGCCCCTCTTGCAGCAGATCGCTAGCGCGCAAAGGCCGATGCCGtccccgccgccgccgccaccaccatcCTCTCATCACCCCTCGTTTCATCCGGCGTCAACGCACGGTTTCCTCCCACCACAACCGCCCATACCTTTGAGCCTCACCTTACCCAATATGACACCTCTTTACCGATCCCCAGTTATTAATCATCGGGACGATCAAGATGTGCCGGAGAATCTTAGTAAAGTACCCATAACCACCGCTCCGCAGACATCGCCCACTTCTCCCGCTGCCATCTTGAATTCTCGTCATTCCTTTCACGACAATCTTCATCAACAACATCAAAAGCAGCAGCTTGAGCAGAGAGAGGAGATAAAACTCGAACAGAGATCACCCGGACAGGAGCCGTATCAGCAGCGACCGATGAGCCGGGAAGGCGCCGAGCGAATAACACCGAAGAGAGAACCCGAGGAGGCGGAGGAGGTCGTGGAGGAAGAGAGCGAAGATTTCGAGGAGACCACGAGACGATACCTCAATTCACCCCAATCCGCGAATCCACCGTCCCAGCCGCAAACGTACGACGATTGCAGTATGGACAGCAAGATCAGCGGACGTTTAGAGGGCGACGGAGAAATGGAGGTGGACGAGGAGATAGAGGAGCAACCGGAAAACCTCTCGGGCAGAGGTACGATCAATCGTTTACCTCAACAAATGATCACGTACCCGGGAGCATCGCCGGCTAGCAGTAGCGCCAGTAGCGGTAGCCTGCAGACATCTTTCGCTGGAATCCTGTTCCCAGGTCCGCCAGCTCATCACCAAATTCCTCATCTTCCTGTTTCCACGCAGGCAGGACCCATCACGACGTCCGTGAGTGACATGATCGATCCATCCAAGGATCCGGCGATCTATTCGACTTTACTACCGCGGCCCGGCAGCAATGACAATTCCTGGGAGAGCTTGATCGAAATAACGAAAACCTCGGAGACGTCCAAGCTGCAGCAACTAGTCGACAATATCGAGCACAAACTGAGCGATCCCAATCAATGCATCGTTTGCCACAGAGTGCTCTCATGCAAGAGCGCGTTGCTGATGCATTATCGGACTCACACCGGCGAGCGTCCTTTCAAGTGTAAAATTTGCGGTCGCGCCTTCACGACGAAGGGCAATCTGAAAACCCACATGGGAGTGCACAGAGCTAAACCGCCACTGAGAGTGTTGCATCAGTGTCCCGTGTGTCACAAGAAATTCACGAACGCTCTCGTATTGCAGCAGCACATACGCCTTCACACCGGGGAGCCCACCGATCTCAGTCCGGAGCAGATCCAAGCTGCGGAAGTGAACGAGTTCCCGCCCGGCTACCATCCGCTGGCGTCTTTCCTCCCGCAAGGATTCCCGCCGATACATCCGACCGGCGCGGGCTTCTCCTTAGGATTCCCTCCATCCAGGCAAACGGTCATCGAGCAACAGTCACAGGAAAGCGATGCCGAGGCGAAAGAAGACTCTCAGCACCGACCAAGATTTATGGAGGAGCACGAGGAGATGGAAGATCAGGAGGACGAGGAGCAAGATCACCGAGAGGACGACGAGAGGTGCGAGTTGAATCGCGACAGGCGTAGCATCGAAGTCGAAGAGGAGCAGGACCACGAGAGTGAAGACACGACCGAGCACAAGGACATGACGCTTCCGATATTTTCGACCTCGTTGGCGGCGCTCGAGAATCAAGTGAGGACCATCACGACGAGTACGGCCACGAGTACGAATGTGGCTAGGTCGCCGTCCTTTCATCGATACAACGGCAGCGAGAAGAGCACTAGCCCGCCGACCTCCGGAGCCCCGCTCGACCTGACGCCCCGCGCTTCGTCCACGCCAGCGTCGGTGGCCTCGGCGTCGCCGACACCGCCGCTCCAGACCACGCCGCATCATCCACCGAATCCCTTCGGCATGTTCGCGGGCCTACTGCAAGCAGCCTCGTCCGCTCCTACCACCAGCACGATAGGCACGTCAAATATAAACAGCATCACTTCGATGAGTGCCGTCAACCCGGGAAGCGGCCCCGGTGGCGGACCACTTGCCTCGCTGACCACCTCGGCGGTACTAGCCGCATCGTCGACTTACAATCCGCTCGGCCTAGCTGTCGGAGGCCCAGCAGTATCGCCGAGTACGCCTATCTCCGTGACGTATCCATCTTGTCCAATCTCATATCAATGTCCTGTTTGTGGTGTAGCTGGACCTGGCACTCCCATTCTCCCGTTAGTACGTGGCAACACCACATGTAAATTCTGCTACAAGACATTTGCGTGCCAATCTGCATTGGAGATTCATTACCGGAGTCACACGAAGGAGCGACCTTTCAAATGCACCATATGCGATCGAGGTTTTTCCACGAAgAACGATGATTCCGGTCAGCAAGTATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCTCTCACAACCCAATCCCCAATATCGCTCGTACCCGGCAAGATCGGCTGCCGGAAATAGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAACGGAAGAACCGGGGGCGGACAGGAACAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGTAAGAGTCTTCTCTACCAGAATCACAGTCAACtgcttaattaaatacaatagaaCGTGTTTTGATGCGCAGGGCAATATGAAGCAGCATATGTTGACTCACAAGATTCGCGATATGCCGCCGCATCTAAGTCCGATGTGCGTCGACGATTCAAGCCTACCGCCTCCACCTCCGCCACCTCCACCACCCCCGCCGATGCCACCGACGTCCATTGAGTCGACGATACCAGTGAAGAGATCGCCGGAGGGAGATCTACCGGCACCGAAGAGACCAGCCAGCGTGCAGAGCAAGCATTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATTCATATGAGAACTCACACTGGCGACAAGCCGTTCCGATGCACCGTCTGTCAGAAGGCGTTCACCACCAAAGGCAACCTTAAGGTGCACATGGGTACTCATATGTTCACCAACGGAACGTCACGTCGAGGCCGACGGATGTCGTTGGATATACCACCCCTGCCAATCACGCCCAAGGACTCGGAGTTTCTGCAACGACGACCGGACCTCTTTTACCCGTATCTTCCCGCGCCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATTTCGGTGATTCAAAGTAGCAACGGGTTACCGCCCCATTCCTTGAGCGCGGGCAAGTACGCGGCAAGCTTGTTCGGCTCGGTGTACGGTGCCGGCGGGGGTGGTTTCTCCCTGGATAAACAGCCGATCGGACCGACCAGTAACGGGCCCCTGGACGGCAAGTCCGCGATACCCTCGGGATCCATGCTCTTCCAGACACCGTCGCCCTCGCACTCGCCCGGCGCGTCGTCCAACGGCGGTAATCAGACGTCCGCCAGTGTGTCCTGGACCGGCGACACTCTTCAGCATCACTTCGACCGGGAAACACCGAGTAGAACTGAGAATGATGCGACACCGCCCACGGCTCGGCTACCACCGCCACCGGCAAGGGGAGAGGGATTGGCCGCGTGA
Protein Sequence: EENDFTSDGEESGGGGGGGEEAVDLTATRSHQGDDDPMEEDEEEGIDEQDEQDEDEEGSRKQIHHRQDAENNNNFVESGLPTAIFPPAGTSHVTLEALQNTKVAVAQFAATALTGADSEAALQDLAFLENTLCTLQNQQVLQLQLIRQLQQQLLITHGQSVIQSSATEPTDSKEASSSPIIHPKPLSSLASPPSSRPPSHHQQTSPAPLTPNLLQERPTSTSSASPLNLPLSSSSATSTVSTTTSSQMPLPHQMPPLCSISASLASSIITNTDPPPLHEPNTLDILQKRTQEVLDNASQGLANNLADELAFRGKGSRLSPYDSKSSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASAQRPMPSPPPPPPPSSHHPSFHPASTHGFLPPQPPIPLSLTLPNMTPLYRSPVINHRDDQDVPENLSKVPITTAPQTSPTSPAAILNSRHSFHDNLHQQHQKQQLEQREEIKLEQRSPGQEPYQQRPMSREGAERITPKREPEEAEEVVEEESEDFEETTRRYLNSPQSANPPSQPQTYDDCSMDSKISGRLEGDGEMEVDEEIEEQPENLSGRGTINRLPQQMITYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHLPVSTQAGPITTSVSDMIDPSKDPAIYSTLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYHPLASFLPQGFPPIHPTGAGFSLGFPPSRQTVIEQQSQESDAEAKEDSQHRPRFMEEHEEMEDQEDEEQDHREDDERCELNRDRRSIEVEEEQDHESEDTTEHKDMTLPIFSTSLAALENQVRTITTSTATSTNVARSPSFHRYNGSEKSTSPPTSGAPLDLTPRASSTPASVASASPTPPLQTTPHHPPNPFGMFAGLLQAASSAPTTSTIGTSNINSITSMSAVNPGSGPGGGPLASLTTSAVLAASSTYNPLGLAVGGPAVSPSTPISVTYPSCPISYQCPVCGVAGPGTPILPLVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKNDDSGQQVCSCADQPFAAKGPILSQPNPQYRSYPARSAAGNSEKPKRRRRRPEERKNRGRTGTGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLVRVFSTRITVNCLIKYNRTCFDAQGNMKQHMLTHKIRDMPPHLSPMCVDDSSLPPPPPPPPPPPPMPPTSIESTIPVKRSPEGDLPAPKRPASVQSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDIPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLSAGKYAASLFGSVYGAGGGGFSLDKQPIGPTSNGPLDGKSAIPSGSMLFQTPSPSHSPGASSNGGNQTSASVSWTGDTLQHHFDRETPSRTENDATPPTARLPPPPARGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_01421750;
80% Identity: -