Basic Information

Insect: Tetramorium parvispinum
Gene Symbol: -
Assembly: GCA_011638315.1
Location: VBVR01004439.1:1794-4950[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.034 4 8.6 0.2 3 23 452 474 451 474 0.94

2 10 0.0027 0.32 12.1 1.8 1 23 480 504 480 504 0.98

3 10 0.00019 0.022 15.8 0.2 1 23 510 534 510 534 0.97

4 10 6.6e-05 0.0077 17.2 0.1 3 23 542 564 540 564 0.93

5 10 5.8e-05 0.0067 17.4 1.7 1 23 571 595 571 595 0.97

6 10 8.7e-05 0.01 16.8 0.6 2 23 603 626 602 626 0.95

7 10 4.2e-06 0.00049 20.9 2.0 1 23 632 656 632 656 0.98

8 10 4.4e-06 0.00051 20.9 0.5 1 23 662 686 662 686 0.97

9 10 0.00097 0.11 13.5 0.7 1 23 692 714 692 714 0.99

10 10 0.39 46 5.3 0.1 1 23 792 817 792 817 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.034	4	8.6	0.2	3	23	452	474	451	474	0.94
2	10	0.0027	0.32	12.1	1.8	1	23	480	504	480	504	0.98
3	10	0.00019	0.022	15.8	0.2	1	23	510	534	510	534	0.97
4	10	6.6e-05	0.0077	17.2	0.1	3	23	542	564	540	564	0.93
5	10	5.8e-05	0.0067	17.4	1.7	1	23	571	595	571	595	0.97
6	10	8.7e-05	0.01	16.8	0.6	2	23	603	626	602	626	0.95
7	10	4.2e-06	0.00049	20.9	2.0	1	23	632	656	632	656	0.98
8	10	4.4e-06	0.00051	20.9	0.5	1	23	662	686	662	686	0.97
9	10	0.00097	0.11	13.5	0.7	1	23	692	714	692	714	0.99
10	10	0.39	46	5.3	0.1	1	23	792	817	792	817	0.95

Sequence Information

Coding Sequence: ATGTCTTGCAGGGgagccgccgctgccgctgtcGCCAGTTGCACGTCGAGTCGACACAGCCGTGAGAGGATCAGCTCCGAGGAGGGCGAGGAAACGGAATGCACGTCCGCGAGTGTGCTCTTTGCCTCGAGGACGGAGGAGGTCGGCAGGAGAGACCGGCGGGCCAGGAAGAATGAGAACTGGCAGCAAACGGCGACCGGCAAGGGCGTCGATGTCGTCGAGACGGTAGCCGACTTTGAAAAATGGCTCAAGATGCGTAGCACGGAGCCGCCGGTGCCGTCGAGCATGGATCTGGATGCGGCCAAGATGGTGGAGGGCGTGGATCGGTATTTAGGCGAAGAGATGCTGTCGCACAGCTGCTTTCTGAGCAAGGACCCGTACGGCTTGTCCATCGACATCGATCTGGCGGACGCCAAGAAGCTCAACTTGTCCTCAAGCTATGATCCAATACTGCAGGATCTGGCGCACAGCGAGAACCGGCTGCTCGAGCCGCCGTGCGAGAAGGTCGTCGACGAATTTATGCTGCCGGAATTCCAGCTGGATCATTTGGATCCGCTGGCGGCACTCACGCCGGATGACATGATGGTGGCCGGTGAGATTCTGCCGTCCGCAAACAGCCAGCCGACGCTAAACGTGGAGAATCAAGATGTCGAACAAAATATCTCAAAGGCGGGAATTCCCGTCGTGCAGAGCAGTGAGAGCCCCTGCGAGAAATCATCGCAGGTCGTTCTCAATCAGCTACCGGTGAATTTAGTCGTAAACGAATTGGAGGACGCAAAGACGGATCAGGAAACTATAGCTCAATCTTCGGCAAATTCCTCGGAGCTCTTCATCGAGGCTCTACCGCCGATCGAGGAGAATCCGTCGAATACCATGACAAATACCGTTGACATGGGCGCGCATGGCATAGAACAATTAAAGAAGACGAAACTCGAGCCTCGCATCATCAAGAAACGTCGACAGAATTCGGAGCGTTTGGAGAAGAAACTCGACAACCACATCAACGGCAAGAACTTTGCCATTAATGCAGACACGGAGGACGGCACGATGGCTGTGGTCGCTATATCCACCGACAAGATCTCCAACATGACGCAAATCGTTATCAATACTGGCACGGAGAAACAGATTTATCAAGGCAAGACCTCGGAGTTGATCGAGGCGACCGGCAATTTCCCGAAATTGCCTAAGATAGATACTTCTGCCGCGGTTTGGAATGGCACGGTTGAATACGGCGCCGACAGTAATCCGAGTAGTCAATACGAAATTGTTATATCCAACGCACTGGAGGAGCTAGGCATCACCGACGACAGCCTGCAGCCCTTGTGCGCCACCGAACACGACAAGGTGTGGCTCTGCCCACGAGACGGCTGTAACAGACAATTCGGCAGATTGTACACTCTAAAAGGTCATTTGTTGGCCCACTATGGAGTTAGACCGTTTAAGTGCGACTTCCAGGGCTGCACTTGGGCCTTTTATTCCGAGTTCAAGCTGAAAAGACACAAGGAGACACATTTGAAACGCAAGGATTATGTTTGCGAGGTGGAAGGCTGCAATCGCCGTTTCACCACCGTCTACAATCTGTGGAGCCACGCGAAACTGCACAGTCGTCCCAATCGGATCGTTTGCCAGGTGCCAGACTGCGGCGAAAAGTTCCAAACGAAACGTGCGTTGGAAGTGCATATGAAATCGCACGATCAGCGCCACGCACCTTACGTGTGCCAGCACGAGGGTTGCGGTAAACGTTACTACAGTAGCAACGCGTTGACGTCACATCAGCGATCACATAGTTACAAGGAAGTGGACATCAAGTGCTCGTGGCCGGGCTGCGGCAAGATCTTCGACAAGCCGTGTCGACTCAAAGCCCACATGCGTTCTCACACCGGCTACAAGCCCTATCCTTGTACTTTCCAGGACTGCAAGTGGGCCTTTTCATCATCCAGTAAGCTCAAGCGTCACCAGAAGAAGCATACGAACGAGCGCAAATTTGTATGCGACGTGCCAGACTGTGGCAAGGCGTTTATGCGCTCGGAACACCTAAAGGAACACCGACTGACGCACACGGAAGGTCGCTTCTTCCAGTGTTTCGTGTGCGCTGCCCGATTCTCCGCCAAAAGTAGTTTGTACGTACATATTAAAAAGCatcagcagaccaaaccggATTTGAACATAGCCAATGACACACCCGAAAGTACTTCCGATGATCAGAAACGCCCGAGAGCAAGAGAATCTCATTACTCGCGAGTGAAGTCGATTACGCCAAAGCACTGGGACGAAGAACTGCAGAATGCCACGGAGGCTATCGCAAGGGAAAACGACGCCGAGAAGCAGGACGCCAGCGCATGTTCCCAGGATGAGGCTCAAATGGAGTGGCTGTATCGTTGCCCGATAGATACATGCGGGGATTTGATCAGCAGCGAGACGAGTCTTCGCGAGCACATGTTAAAAGTGCATGGCATACATTGCGACGATTTGCTGACTAAACCGTCTTCAGACGACGCCGACATAgattacgttttatataccGTGCACAGCTCGCCCCCGAATTCGCCCACTGCCGTCGAAGAAGAGCAGATGGTCATGGTGACTCCGTGCGATGCTGTCATCCTTGACACCTCCTCATCAGGAACGGACCATTGTCTGCCGGAACCGCCAGCTTTCAACACCTTGCTGAAAAGTTCGGAAACGTTCCAAAACGACGCGCAAACTGACGAGCAAATCGATAAGGAAACTGTATCGGTGAAGGAGCAGGGCTCGGCAAGGACAGATCTAACATATTCCGACTGGTCTAAACTGAAGAAGAGCAGTGCATTGATGAATTCGGAAACGTCGGACATTGCATCGGGCGCGAGTGGTGATTTGAACGAGGGTCTATTATTCACAGAAGAATTGCCATCGATGTACTATCAAGACGAAGGTACGGAATATCAGGTGCTGTTATTAGACTCAAGTCCGCTCGAGAGTGCCAGCAATTTGCGCGGTCTCGAGTGA
Protein Sequence: MSCRGAAAAAVASCTSSRHSRERISSEEGEETECTSASVLFASRTEEVGRRDRRARKNENWQQTATGKGVDVVETVADFEKWLKMRSTEPPVPSSMDLDAAKMVEGVDRYLGEEMLSHSCFLSKDPYGLSIDIDLADAKKLNLSSSYDPILQDLAHSENRLLEPPCEKVVDEFMLPEFQLDHLDPLAALTPDDMMVAGEILPSANSQPTLNVENQDVEQNISKAGIPVVQSSESPCEKSSQVVLNQLPVNLVVNELEDAKTDQETIAQSSANSSELFIEALPPIEENPSNTMTNTVDMGAHGIEQLKKTKLEPRIIKKRRQNSERLEKKLDNHINGKNFAINADTEDGTMAVVAISTDKISNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAVWNGTVEYGADSNPSSQYEIVISNALEELGITDDSLQPLCATEHDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFQGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHSRPNRIVCQVPDCGEKFQTKRALEVHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGRFFQCFVCAARFSAKSSLYVHIKKHQQTKPDLNIANDTPESTSDDQKRPRARESHYSRVKSITPKHWDEELQNATEAIARENDAEKQDASACSQDEAQMEWLYRCPIDTCGDLISSETSLREHMLKVHGIHCDDLLTKPSSDDADIDYVLYTVHSSPPNSPTAVEEEQMVMVTPCDAVILDTSSSGTDHCLPEPPAFNTLLKSSETFQNDAQTDEQIDKETVSVKEQGSARTDLTYSDWSKLKKSSALMNSETSDIASGASGDLNEGLLFTEELPSMYYQDEGTEYQVLLLDSSPLESASNLRGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00128451;
90% Identity: iTF_01422416; iTF_01421742; iTF_01423859;
80% Identity: -