Basic Information

Insect: Tetramorium parvispinum
Gene Symbol: -
Assembly: GCA_011638315.1
Location: VBVR01009059.1:1-5102[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.4e-05 0.0099 16.8 3.1 1 23 118 140 118 140 0.96

2 14 1.8e-05 0.0021 18.9 1.5 1 23 146 168 146 168 0.98

3 14 0.052 6.1 8.1 2.0 1 23 175 198 175 198 0.94

4 14 8e-07 9.3e-05 23.2 1.3 1 23 204 226 204 226 0.98

5 14 0.084 9.9 7.4 4.0 2 20 232 250 231 254 0.82

6 14 3.5e-05 0.0041 18.0 1.3 1 23 261 283 261 283 0.95

7 14 7.6e-07 8.9e-05 23.3 1.2 1 23 287 309 287 309 0.99

8 14 0.022 2.6 9.3 1.1 1 23 315 337 315 337 0.94

9 14 7.8e-06 0.00091 20.1 0.6 1 23 343 365 343 365 0.98

10 14 1.9e-05 0.0022 18.9 1.1 3 23 485 505 483 505 0.96

11 14 7.7e-05 0.0091 17.0 0.3 1 23 511 533 511 533 0.97

12 14 0.017 1.9 9.6 1.4 2 23 539 561 538 561 0.92

13 14 0.47 55 5.1 4.0 1 23 565 587 565 587 0.97

14 14 0.21 25 6.1 1.3 3 23 593 611 592 611 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.4e-05	0.0099	16.8	3.1	1	23	118	140	118	140	0.96
2	14	1.8e-05	0.0021	18.9	1.5	1	23	146	168	146	168	0.98
3	14	0.052	6.1	8.1	2.0	1	23	175	198	175	198	0.94
4	14	8e-07	9.3e-05	23.2	1.3	1	23	204	226	204	226	0.98
5	14	0.084	9.9	7.4	4.0	2	20	232	250	231	254	0.82
6	14	3.5e-05	0.0041	18.0	1.3	1	23	261	283	261	283	0.95
7	14	7.6e-07	8.9e-05	23.3	1.2	1	23	287	309	287	309	0.99
8	14	0.022	2.6	9.3	1.1	1	23	315	337	315	337	0.94
9	14	7.8e-06	0.00091	20.1	0.6	1	23	343	365	343	365	0.98
10	14	1.9e-05	0.0022	18.9	1.1	3	23	485	505	483	505	0.96
11	14	7.7e-05	0.0091	17.0	0.3	1	23	511	533	511	533	0.97
12	14	0.017	1.9	9.6	1.4	2	23	539	561	538	561	0.92
13	14	0.47	55	5.1	4.0	1	23	565	587	565	587	0.97
14	14	0.21	25	6.1	1.3	3	23	593	611	592	611	0.95

Sequence Information

Coding Sequence: taCAATCAGCTAGATCCACTCTCGCCAACTTTTCTGATAGTAAAACTGGAAGACGATTATTTTCGCATCCCGAAATCATTGAGCGTGTTTATGATGAAAGAACCGCCACCTACCGAGGAAAATAGTCTCGAAGCTGAGtcgaaaaaagataaagaagtGAAAAGAAAGGCTAATCGTGAcgagaaaaatcaaaatcgCATTGAAACTAGGAAGAGAAGTAAAACCGTCGTCAACGATCTGAATGATATGGACGATTTGGATGACGCTCCGTTGGATTTCAGAAAACGGTGCAAAGACGGATTCTCAAAGACGCGATCCGGCAAGCATACGACTAGTCCAAAGAAGAAATCACACATATGTGAGATCTGTTACATCACATTCGACCGCAAGAGCAAACTCACTAGTCACATGTTCAAGCACAGCAACTCACGGCCGCACAAGTGCACAATCTGCTCCAAGGGCTTCAAGACCGGTGCATATCTTTCTAGGCATATGGAGATCCATGACGAGCCCGCGCAGCTTCACGCGTGCACGTTGTGCGACTTCAAGGCGCGCACAAAGCCGTACTTGAAGATACATTATATTCGCAAGCACACCGAGGATTACAACTATAGCTGCGAACAGTGCGGCAAGATGTTCAAGGTGCAGTCAGACTATACGACACACATGAAAGATCACGATACGGAGTCCTGCGTTTGCGATATATGCGGCACGTCCTATCCTAGCAAGAGTTCCTTGTACTTCCACAAGCATTACAAGCACAAGACGAAGATTAAGGAATTCGAGTGTCAGATTTGCAGGAAGCGCTTCAAGACCCAGAAGAATCTTGACAGTCACGCTGAGCTGCACAAGATGAAGTACGTTTGTGAGCAATGCGGGATGGAGTTCAAGTTCAAATACGGTCTCACGAAGCATCTCAGGACGCACTCGGGCGAAAAGTCGTATCTCTGCGCGATATGCGGCAAGACTTTCGGCTGTCTCAGCTCGCAAAAGATTCATCTGCTCACTCATGTCGGTGAGCGACCTTACGTCTGTGACATTTGCGGCCAGAGCTTCACCCAACGATCGCCGATGATGTTGCATCGGAAGAAGCACCCTGGTGTGCATCCACCGCCACCGCCCATCAAAATTACGAATCTTCTGCACGGTGTACAGGACAAAATTGTTGTGAATAAAAGTGCCAAgTCTGTGCCATGTGATCCTCTTCAACAAAATTTCCTTGTGATTCAAAGCAACcaacaattttatcttatgCCAATACAAGGTCCTTATAACTTTGTCAAAAATGAAGATGAAAGTGAGATTCTAAAACTGCCATGTCGTTCGCCAGAAGTAAAAGTGGAGGTTGATGAATCTGTAGTGGAGTCTGAAAAAATCTACAAACATGGAGAAGACGAAATGACTTTAGtatcagaaatatataatgaagatTTGAAACCGTATGCTTCAAATTGCCCTTATTGCTGGAAAACATTTgatgaaaattgtaatctGAAAGATCATATGATAATTCACAGCAATGATTATCTATATGAATGCGCAATTTGTGGTCTACGCCTGAAAACTAAGAAATTGCTTAAATCTCATATATTGTTACATGACCTGAATTTGTTGCATTGTGCACACTGCGATTTCAAATCGGCAGAAGCTTCAAGCCTCAAGCGCCATCAGATAGAATGGCATGCTTATATCTACAAGTGTCAGTTCTGCTCCGAATTATTCCAAAGCAAAATGGTATTCCTGAAACATATGGAACACCATACTGCTGTTGCAGATTGCAATATATGTGATCAACCATATGAGGATAATCTTTCGCAACACCAATGTAAACAtcagaataatgaaaattatatccatAAGCAATTGCAGTGTGAAGATAAGAGTCAAAATAATGACaatgatgaaattataaagaaatGTGGCGTTTTGGAACCTTGA
Protein Sequence: YNQLDPLSPTFLIVKLEDDYFRIPKSLSVFMMKEPPPTEENSLEAESKKDKEVKRKANRDEKNQNRIETRKRSKTVVNDLNDMDDLDDAPLDFRKRCKDGFSKTRSGKHTTSPKKKSHICEICYITFDRKSKLTSHMFKHSNSRPHKCTICSKGFKTGAYLSRHMEIHDEPAQLHACTLCDFKARTKPYLKIHYIRKHTEDYNYSCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGTSYPSKSSLYFHKHYKHKTKIKEFECQICRKRFKTQKNLDSHAELHKMKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRKKHPGVHPPPPPIKITNLLHGVQDKIVVNKSAKSVPCDPLQQNFLVIQSNQQFYLMPIQGPYNFVKNEDESEILKLPCRSPEVKVEVDESVVESEKIYKHGEDEMTLVSEIYNEDLKPYASNCPYCWKTFDENCNLKDHMIIHSNDYLYECAICGLRLKTKKLLKSHILLHDLNLLHCAHCDFKSAEASSLKRHQIEWHAYIYKCQFCSELFQSKMVFLKHMEHHTAVADCNICDQPYEDNLSQHQCKHQNNENYIHKQLQCEDKSQNNDNDEIIKKCGVLEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -