Basic Information

Insect: Tetramorium parvispinum
Gene Symbol: -
Assembly: GCA_011638315.1
Location: VBVR01002831.1:16143-17942[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.9e-05 0.0022 18.9 2.2 1 23 78 100 78 100 0.99

2 13 0.0036 0.42 11.7 2.2 1 23 140 163 140 163 0.97

3 13 2e-05 0.0023 18.8 2.4 1 23 175 197 175 197 0.98

4 13 0.00024 0.028 15.4 4.4 1 23 205 227 205 227 0.98

5 13 0.052 6.1 8.1 7.8 3 23 318 338 317 338 0.97

6 13 0.00016 0.019 15.9 1.4 1 23 347 370 347 370 0.97

7 13 0.013 1.5 10.0 2.0 1 23 385 408 385 408 0.95

8 13 1.3e-06 0.00015 22.6 1.2 1 23 414 437 414 437 0.96

9 13 0.013 1.5 10.0 0.8 3 23 444 465 442 465 0.94

10 13 0.00014 0.016 16.2 0.5 1 23 470 493 470 493 0.97

11 13 1.8e-08 2.1e-06 28.4 0.4 2 23 500 521 499 521 0.97

12 13 6.1e-07 7.1e-05 23.6 1.0 1 23 527 549 527 549 0.98

13 13 3.8e-07 4.5e-05 24.2 0.1 1 23 555 577 555 577 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.9e-05	0.0022	18.9	2.2	1	23	78	100	78	100	0.99
2	13	0.0036	0.42	11.7	2.2	1	23	140	163	140	163	0.97
3	13	2e-05	0.0023	18.8	2.4	1	23	175	197	175	197	0.98
4	13	0.00024	0.028	15.4	4.4	1	23	205	227	205	227	0.98
5	13	0.052	6.1	8.1	7.8	3	23	318	338	317	338	0.97
6	13	0.00016	0.019	15.9	1.4	1	23	347	370	347	370	0.97
7	13	0.013	1.5	10.0	2.0	1	23	385	408	385	408	0.95
8	13	1.3e-06	0.00015	22.6	1.2	1	23	414	437	414	437	0.96
9	13	0.013	1.5	10.0	0.8	3	23	444	465	442	465	0.94
10	13	0.00014	0.016	16.2	0.5	1	23	470	493	470	493	0.97
11	13	1.8e-08	2.1e-06	28.4	0.4	2	23	500	521	499	521	0.97
12	13	6.1e-07	7.1e-05	23.6	1.0	1	23	527	549	527	549	0.98
13	13	3.8e-07	4.5e-05	24.2	0.1	1	23	555	577	555	577	0.98

Sequence Information

Coding Sequence: ATGAGACTGTGGCAGCACGCTGATGCCGGCGGTAAACTACGCTATTCGTTAGTACCGATATTAGacgatgttaataaaaataaagaagacgTGAAAGTATTTAATGTACTACCGTACTCTGTTAAAATTGAAGAGGACAAGACTCAACAGCGCAATCAGAGAATCAGCGGATGCAGTGTCAGTAATTGCATGGATTCCTTGATGCGTTTGCGCAAGATAGTCGTTGATAGTTACACTTGCGACAAGTGCAATATGAAATTTCCTATGCGGTCTATGCTGAATCGCCACAAAATGACGCATATGCGTTTACGGCTTCGTGGAAAACGTCCAAGAGAAAAGTATGttcgatatttaaaaacgaACACTCGAAAACAATCCAGGCAGTTAAAGGCGCAAAAGCGTTTAGAGGAAACAAAATACGTTTGCACGTTTTGCGATTTCGACTGTAATAGATTGGCGACTTTGAACGCGCATGTAAAGAGGAAACACAAGAAAGACACGGTCAAAacaaattcaaagaaattcaGTTGTATGATTTGCAATTATGAGTGTTCGAGCGAAGCGAATTTGAGCAGACACATGCGCAaacacagaaataaaaatacaacgaGTTTTACTTGCAACATGTGCGATTTTGAATGTAAAAGGAGCACTACTTTAATGTCTCACTTGAGAAGTCATAAGAGACCTAAGAAAAATTCGGACGCGAGTTGTGCGGAAAAGAAACGTAGAATAACGAAGTGTAACTATACGTCCCCTAAAAAGACGAAAAAAGAAAGTCAATCGGATTGCTCGTACAACCGCGAGACGGCTAAAAGAACTGCGTTGATCACGTACGAGGATTCCAACAtgataattaaagaagaagtTTGTGTTGAGAACGAGACATCGGCAATTGCCGCTGACGTCCCGAAGAAACCTAGCCAGAAGAGGATGCCCGTTGAGGAACATTGCGATCTTTGCGATTTCACGTGCACGAAGAAGAGCACACTATATTCTCATAAACGCCGACACAAGGTGGAGGATGTCAATGAGGTGTACGCGTGCAACGAATGCGGCTTCAAGACTGCCAAGAAGTCATCGCTGTACTCTCACATCAAGCGGAAGCACAAAGAGTCACGGACCTGCGACGGCGACACGCAGCCGGAACTGTTCTATTGCAATCAGTGCGACTACAAGAACAAAAACAAGTATGAGTTGAAGATACATGTCGCGCGCAAGCATACGGACGATTTCAAGTTCTCCTGCGAAACTTGCGGTAAGAAGTTCAAGGTCAAGGGCGACTTGACAAACCATATACGTTTCAGTCACCGGGAGCAACCGGTGATCTGCGACGTGTGTGGCAAGACTTGTCTCAATAGCAACTCTTTGTACGTGCATCAGAAGTTTGCACACTACAAAGCCAAATATGAGTGTCAGATATGCAAAAGGCGGATGGTCAGCCAGGAGAATCTTAATGAACACATGCTCAGGCAACATGAGCGCAGGGAGAACGTGGTATGCGAGGAGTGCGGCAAGACGTTCTCGCGAAACAGCAGATTGAAGGTGCACATGAGGATTCACACCGGGGACAAACCGTACAGCTGCACCATTTGCAAGAAGTCCTTCGCCCGCAGGACAGCTCTCAAGCAGCATCTCCTCATCCATACCGGCATCAGGCCATATGTATGCGATATCTGCGGCAAGGCCTTCACCCAAAAACCGGGTTTAATCAGCCACAGGAAGTCACATCCGGGTTCTCATCCGCCTCTACCGCGCGTTCTCATCGATCATATTTTGAACGATGTTATGAACGGTTGA
Protein Sequence: MRLWQHADAGGKLRYSLVPILDDVNKNKEDVKVFNVLPYSVKIEEDKTQQRNQRISGCSVSNCMDSLMRLRKIVVDSYTCDKCNMKFPMRSMLNRHKMTHMRLRLRGKRPREKYVRYLKTNTRKQSRQLKAQKRLEETKYVCTFCDFDCNRLATLNAHVKRKHKKDTVKTNSKKFSCMICNYECSSEANLSRHMRKHRNKNTTSFTCNMCDFECKRSTTLMSHLRSHKRPKKNSDASCAEKKRRITKCNYTSPKKTKKESQSDCSYNRETAKRTALITYEDSNMIIKEEVCVENETSAIAADVPKKPSQKRMPVEEHCDLCDFTCTKKSTLYSHKRRHKVEDVNEVYACNECGFKTAKKSSLYSHIKRKHKESRTCDGDTQPELFYCNQCDYKNKNKYELKIHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVSQENLNEHMLRQHERRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYSCTICKKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182771;
90% Identity: iTF_01421714;
80% Identity: -