Tpar010362.1
Basic Information
- Insect
- Tetramorium parvispinum
- Gene Symbol
- -
- Assembly
- GCA_011638315.1
- Location
- VBVR01009767.1:1-1042[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-15 7.8e-12 45.3 0.0 2 45 19 62 18 62 0.94 2 2 9.5 1.3e+04 -3.5 0.0 20 28 73 81 73 84 0.81
Sequence Information
- Coding Sequence
- GTTGCGGATTGCGTCCAACCGAAGCCAGAGTGGAAGCGCTATAAGCAATACACCCGAAACGACATAACTCAGGCGATTGATGCAGTGAGGGATGGCATGAGCGCCGTCCAGGCAGCGCGAAAATACGGTGTGCCATCGCGCACGCTTTACGACAAAGTGAAGAAGCTCGGCATTCCGACATCCCGGCCGTTCAAGCGTTCGGCAAGCAACGGCGGCAGCAGGGCTTGCTTCCCGTATGGCATCGGCGCCAACGTGAACGGCACTCTCTACGACAATACCGGTAGCAGTACCAATGCCCTGTCCGAAAACGAGACCGAGAGCGGCGGTAACAATGTCAACGTCATCGAGGCTCTGGCCGGCACTAGTACCGCAGTTTTCGAAGCTGGTACCTACACGAAAGTGAAGGATACGTCGCAAGACCGCGACTCGATGTTGGACTCGATGGCCCGTTGCAGCGCGAGTCCGGTGATATCCTGCACTAAAAGACAGCAGGATCTGGATGATCAGGTGGAAGATCTGTCGGTGAGTCGCAAATCCGACGTTTCGACGTTCCGACGTGTGATAGTACCGCCGTCCACTACATCGGCCGTAATTAAAGAGGAGGCGCAGGAAGCAGGTCTTGATAGTAGCGACAGCTAA
- Protein Sequence
- VADCVQPKPEWKRYKQYTRNDITQAIDAVRDGMSAVQAARKYGVPSRTLYDKVKKLGIPTSRPFKRSASNGGSRACFPYGIGANVNGTLYDNTGSSTNALSENETESGGNNVNVIEALAGTSTAVFEAGTYTKVKDTSQDRDSMLDSMARCSASPVISCTKRQQDLDDQVEDLSVSRKSDVSTFRRVIVPPSTTSAVIKEEAQEAGLDSSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -