Timm027041.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- -
- Assembly
- GCA_011636585.1
- Location
- VBVO01004591.1:1498-5703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.1 1.1e+03 0.9 1.2 1 13 212 224 212 226 0.82 2 14 0.0099 1.2 10.3 0.5 1 23 298 321 298 321 0.95 3 14 0.13 17 6.7 1.0 5 23 328 347 327 347 0.94 4 14 7.1 8.8e+02 1.3 0.3 2 23 353 374 352 374 0.94 5 14 3.2 4e+02 2.4 0.1 5 19 408 422 396 422 0.91 6 14 0.00069 0.086 13.9 0.1 1 21 556 576 556 577 0.96 7 14 0.00011 0.013 16.5 0.1 3 23 585 606 583 606 0.92 8 14 7.1 8.9e+02 1.3 5.3 2 23 617 639 616 639 0.89 9 14 0.59 74 4.7 0.2 2 21 668 687 668 688 0.90 10 14 0.0093 1.2 10.3 3.0 1 23 729 752 729 752 0.92 11 14 0.2 25 6.2 2.0 1 23 801 823 801 823 0.95 12 14 0.71 88 4.4 5.5 1 23 829 852 829 852 0.94 13 14 0.003 0.38 11.9 1.2 1 23 931 954 931 954 0.93 14 14 0.0032 0.4 11.8 0.6 2 23 1238 1260 1237 1260 0.95
Sequence Information
- Coding Sequence
- ATGGATACTGAAAAATCacttaataatgaaatgtctCCATCTAAAAGATTGCGGCAACGAATGTTAACGGAATACTTTGAACTtagcaaaaagaaatatgatattaatgatattaatccAAATATATTGAACACTATGAAAGATGATTTTTCTGCATGTACTTTACATCATGATGAACAAATAGTAGGAAAATCAAAGTCAAAACTTTCAAAAAGACATAATGATCAAACTGATTCTTTATCTACAAGATCGGACAATCTTTCAAAACAAATGGCACAGTCTGTTTCGGAACAAACAACTGTAAAACATGAAACAGATTCATCTAAAAAACCATTTGTAAGACTACATGCGGACTTTGAAATGATGAAATCTTTTCTGGAGAATCTTTCTGATACGATTGACGATAAAGTGACTGAAGATCGAATTAGTAatgatgttttatataattgtgaaatacCCTATAGTTTACGATCTCTACATGGAATCTCTTCTGTGGAAACAGGTTCAAATCCAGGGAGAAGAAAGACCAGAAGTACGTCTAGGACATCTCAAGTTAACATGGAATTcagtattaaaagaaaacagattATGAACAAAGTAGACCCTAAagattggaaaattattatggCTCATTTTAAATGCAAGGAGTGTACAATTCCTTTAACAAGATGTGATGAACAACCAAGAAGTTCTTATCAGATTTTTACAATCGATGCTATGAAAAACACTTCCCTTACTCCTCAACGCAACTCTATGTTACTTCAAGAAAGAGACACACCAAATAAAGTGAGATATAAGAACTTAGAGGTTTCTTTAGAACGTTTAACAAATGTTTCAGCCGCAGATACAAACGCAAAAACAGAATTGGATGATGAGAAACACAATAGCAATTATTTGTGTAAAGTTTGTGAAATGAGTTTTCCTTCAAAATTGGACAGACGCGTACATATTAAATCGTCTCATCTAGCGTATATGTCAAGCATATGTAATGCCCGATATACACAAAAGCATAAATTACTTCAGCATTACTTACGCGAACATCTATTTAAACAAGATCAATGTTGCATTTGTTACATGTTACTACCTGATTATGAAGCAGTGAagcaacatttaaatattcactGTTTAAAGTTCCTTCAAAAAGAAGATGATCAATATGCAATAGATGTTGAGTTAAAATGCAGCCAAAAATGCTCGACAGAAAAACTCCCAGAGAAccttaattgcaataaaatattcttatcgcAATCATCCTTAGAGGCACACCCAATTTGTTGCGGAACACAAGAAGCGATGGAGAAAGATTCCGTGGAAGAAGTAAGTGTACACCCGAAAGACTTTCCACAGCATAAGAAGAACCCCGAACCCAAAGAACCAGAAACTACAGCTATATGTGATAAAAGGATTAATCCAGATTTATGTAAACCCTTAAACAGCGACGGTGTAGaagaaaaatcaaacaaaCGTCGAATATCGCttcataatgaaaaagaactggacattgaaattaatcgaaatgtATTTGTTAATAACAACTTAACCGAGGAGAAAATCGAAAGTGTCAACAAATCACAAAACTCTGAAAAGcttttagaaaataacaatTCTACAGTTAGTAATCAGCTTACTGCGAAAATGCAATTGGGCGAGATTACAATAAAAACTTATCCCTGCGATGTATGTGGAAAGCAGTTTCAGATTCGTAAAAATTTGGAGTTACACCTGCGCGCTTTTAGTTTAGCTACCGATATCTGTCCATTGTGTGGCACCGGATTCAGTTCTAAACGTTTGCTACAGACACATATTACTGCAGCACATGTGCCACATATTTCACGGACTTATAGTCTTCATTGCGTATTCTGTAATCAAggtttctttaaaaaacatgAACTTCGGCCTCATATGTTACACTTACATTGTAAACAACTGCTCGACATGGTCACGCAGAATCTTAAAGAAAGACAAGAGAAATCCAATCGTTCATCAATTATCCATACCGCAGTGTGTGACGTTTGTAAGTTGGTATTTGAGAATCATGATCGTTACGTAGAACACCGgatgtattattacaaaaaccaCACATTTACATGTTCACTTTGCGCGATAGATTTTCAAGGAATGTACATGTATCATAATCATAACAAACTTGTACATTGTCCAGAAGATAAACGCATGTCATATACTTATATCTGTGACATATGCAAGGAGGGATTTAATCGtgaatcacatttttattcgcaCAATATGCATGTTCATTCGAATGAAATTGTTAGTGTGTCGTTAGTTAAGACTACAAAAGAACTTGAAGAAAAACAGCATTCTAATTACTCATCCGATGGCCAGGAGAAGATTAGAAATATTCCTGCAGATCAAGAAAAGCAAGCTAAACTGCGGTCCGTGTATACTTGCGAAATTTGTCAGGTGAAATGTATAGATatgattaatatgaaaaagcaCAAAGAATTTCATTCCAATGATGGCGATTTTAAATGTGGCAAGTGTAACAGACGATGCAAAACATTTCAGTTACTTGATTATCATAATAGATTAACTCACCTATatcatgatattaataataagcatTTATGTCACATTTGTGGTGAAGTTCTGGAAACTATAATTGCACTGAAATGTCACGAAAAACACTTCCATTCAAATGATAATACTGATGATACTGATAATAATACAGataattcgaaaaattgtGGTCAGATATTGTCTTCGAACATTACATACAAGCTAGTGAAATATCCATATAAACCCAAGAATAATACAAGCAATGTAACTGAATACACCTGCTTATTTTGCGATATGAAGTTTTCCACTGCTAACAATATCCAAACACACATTGTTCATGTTCATATGGATGATATGATAGCTAAACAAACTGCTTTAAAACTTGCTCttcctattaataataatgatgttcagaaaaaaattgttgaaactaATCCAGcagcatcatcatcatcatcttcttcttcttcatcattatcatcgtCATTATCATCTAAAGATGATTCAACTCAACTTTCTCAAAGATCTATACTTCAATCTATACTACAATCTGGTAGAACCCAAAATAAACCCACTAAACTTtttgaattaaagaaatttaaaactgtttatttgaaagataataaaattatagaaaagacTTCTCCAAATCCTGCAACtctatgtattaataaatctaaagataTTTCGACACATAGTACTATTGCATCAAATACGAAATCACAAGCAGATACTTCAGTTTCTTCATCCACTAGTTCATTACCTTTTAGGTATGTCGCATCAACTACTGAATTCAGAAATAACACTCCATCAACGGTACCTATTGTATCAAATAAAACTATTGTATCAAATACTAAATCCAAAGATAATACTTCAATTCCTCTGTCTACATCAACTAATGATCTCAAtgggaaaaataataaagtgtcTTTAAAATCTGGATCAAACAGTGAATTTAAAGCTAATTCAGTTTCATCAAATGgatttataagtaataaatccAAAACATCATTTGTAGTTCCTTTAACTAAACACAAAGTTGGACCTATACTCGTTACGCCACAAAGTGGGCAAGgcaaagaaattacaaatcaaAAACCAGAATCAATGAGCAATTACGAAAATTCCCTCCACTTCACCGATGAACTGACGATGTGGGAACATATGTTTAAGGCTCAGAATTCTTCTATGATACAATGTTTATTGTGTCCACTTCAGTTCAGTAATGAGACCCAATATAAGAGGCACTTGACAATGACtcatacatattatAATGCATCAAATCAATTAAGAACCAAAGTAACAAACACGCTCAATCACGAAAAACAGAATGAGAAAATTGGTAAATTGAGAGTAAAACCTTTTGCAAAgatcattgaaaatttatctgtGGATTCTGTAATAAACCTTTAA
- Protein Sequence
- MDTEKSLNNEMSPSKRLRQRMLTEYFELSKKKYDINDINPNILNTMKDDFSACTLHHDEQIVGKSKSKLSKRHNDQTDSLSTRSDNLSKQMAQSVSEQTTVKHETDSSKKPFVRLHADFEMMKSFLENLSDTIDDKVTEDRISNDVLYNCEIPYSLRSLHGISSVETGSNPGRRKTRSTSRTSQVNMEFSIKRKQIMNKVDPKDWKIIMAHFKCKECTIPLTRCDEQPRSSYQIFTIDAMKNTSLTPQRNSMLLQERDTPNKVRYKNLEVSLERLTNVSAADTNAKTELDDEKHNSNYLCKVCEMSFPSKLDRRVHIKSSHLAYMSSICNARYTQKHKLLQHYLREHLFKQDQCCICYMLLPDYEAVKQHLNIHCLKFLQKEDDQYAIDVELKCSQKCSTEKLPENLNCNKIFLSQSSLEAHPICCGTQEAMEKDSVEEVSVHPKDFPQHKKNPEPKEPETTAICDKRINPDLCKPLNSDGVEEKSNKRRISLHNEKELDIEINRNVFVNNNLTEEKIESVNKSQNSEKLLENNNSTVSNQLTAKMQLGEITIKTYPCDVCGKQFQIRKNLELHLRAFSLATDICPLCGTGFSSKRLLQTHITAAHVPHISRTYSLHCVFCNQGFFKKHELRPHMLHLHCKQLLDMVTQNLKERQEKSNRSSIIHTAVCDVCKLVFENHDRYVEHRMYYYKNHTFTCSLCAIDFQGMYMYHNHNKLVHCPEDKRMSYTYICDICKEGFNRESHFYSHNMHVHSNEIVSVSLVKTTKELEEKQHSNYSSDGQEKIRNIPADQEKQAKLRSVYTCEICQVKCIDMINMKKHKEFHSNDGDFKCGKCNRRCKTFQLLDYHNRLTHLYHDINNKHLCHICGEVLETIIALKCHEKHFHSNDNTDDTDNNTDNSKNCGQILSSNITYKLVKYPYKPKNNTSNVTEYTCLFCDMKFSTANNIQTHIVHVHMDDMIAKQTALKLALPINNNDVQKKIVETNPAASSSSSSSSSSLSSSLSSKDDSTQLSQRSILQSILQSGRTQNKPTKLFELKKFKTVYLKDNKIIEKTSPNPATLCINKSKDISTHSTIASNTKSQADTSVSSSTSSLPFRYVASTTEFRNNTPSTVPIVSNKTIVSNTKSKDNTSIPLSTSTNDLNGKNNKVSLKSGSNSEFKANSVSSNGFISNKSKTSFVVPLTKHKVGPILVTPQSGQGKEITNQKPESMSNYENSLHFTDELTMWEHMFKAQNSSMIQCLLCPLQFSNETQYKRHLTMTHTYYNASNQLRTKVTNTLNHEKQNEKIGKLRVKPFAKIIENLSVDSVINL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -