Basic Information

Insect: Tetramorium immigrans
Gene Symbol: -
Assembly: GCA_011636585.1
Location: VBVO01002204.1:18309-22272[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0001 0.013 16.5 0.2 1 23 695 717 695 717 0.97

2 7 0.0005 0.063 14.3 2.4 1 23 769 791 769 791 0.97

3 7 0.00047 0.059 14.4 0.5 1 23 873 895 873 895 0.98

4 7 0.23 29 6.0 0.0 1 23 911 933 911 933 0.97

5 7 0.00034 0.042 14.9 0.1 1 23 968 990 968 990 0.98

6 7 0.015 1.9 9.7 0.1 1 23 1009 1031 1009 1031 0.97

7 7 3.4e-05 0.0043 18.0 0.1 2 23 1037 1058 1036 1058 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0001	0.013	16.5	0.2	1	23	695	717	695	717	0.97
2	7	0.0005	0.063	14.3	2.4	1	23	769	791	769	791	0.97
3	7	0.00047	0.059	14.4	0.5	1	23	873	895	873	895	0.98
4	7	0.23	29	6.0	0.0	1	23	911	933	911	933	0.97
5	7	0.00034	0.042	14.9	0.1	1	23	968	990	968	990	0.98
6	7	0.015	1.9	9.7	0.1	1	23	1009	1031	1009	1031	0.97
7	7	3.4e-05	0.0043	18.0	0.1	2	23	1037	1058	1036	1058	0.97

Sequence Information

Coding Sequence: ATGTCGGACAAGCACGAGTCGCCAAGTATGGCCGGGCGCTGCCGAATCTGCCTGATCGCCCACGGTTGCATGACCAGTCTACAGAGCGACCGCGTGGAAGCCAAGCTCAAGGATTTGACTAAGTGCACCTGCATCGATATCAAGTATGAGGAGAATCTGCCGGGGGTTGTGTGTCACGTATGCTTATATAAGCTGAACATGTGGAGCGAGTTCAAAGAGCAGTTTATACAGTCCAACAAGGTCCTCCTAGAACAATTGGAGATATCTGAAGTGTCTGATAATACTATTAAGGATTCTTCCAAGGATAAAAGTTGCACGACGAAGAATGGGAACGTTGGGAAGAGGAAACGTAAAAGTGGCGAGGATACTGTTTCTGACACTGAGAAGaaaaaatcaaagttagATGTACCTTCATCGGAAGTCGCGAATATTACTTGTGACTCAATTATATCggacacaatatatatatcgtcCGATGAGAATGATAAATCAAGTTCATCTAAGCCAAAGAAGAATGCGAACAACGGCGAGGAGTCTGCGGAGAGTAAAATGTATTCCGGACCAAGAGCTAGATTGTTACCTGCGAGGCGCGGCAGGAATATTGAACGGAGGAAGGCGTCCACGAAGCGTTGGGTAGAGAGGAAGAAGGCGCTTATAGCTTCAATTGGCGAAACCGTGTCCGACACGGATTCCATAGCCTCTGACGACGTGCAATTGTCGCCCGTACAGAAGGCTCGAGCAAAGACCAACGCGGATAAGGAATTGGAGAGGCAGAAGAAAATGGCGAAGGTGCTGAAAAATCTAGAGACGAATCTTACAGAAAAGTACATCGCATTTCGTGACAAAGACACGGATTCTGACACGCGCAGAACGAGATTGAGCAAGGAAGCGCATTCGAACACCTTGCAACAGAGAGACAAAAATTCCTTGTTGAACCAAATCGGGAAGAAGAGCATTATCGAGAAATATGGATCGTCTCTGGATAGCTCGATGGAAAGGGATAATTCGCCGACTCCGTTAATGAACGACGTTACGCTGGATGGCCACGCGAGAAATTTCAACGTGCAGGCTGATGAGGAAGCTTTTACACCTCACTCGGTGCAATCCGAAATAGTGGTCGACGACGTAACGTACGCTGTAACGTCCACGTTAATTCTTACCGCGGATTCGTcgaattatgataaaatggacttgtataatttaatgaaggATTCTAAGAGCCTTAGCCCTGACGAAAGCAATCGACAGAAAAATACCGATATCATTAAGGCAGTTAACCTGTGTCCCGTGCCCAATGCAAACAAATCTAACAGCAAGTTTAGGAAGTCTAAGAGCGACATAAAATTTGTCGAAAGATGTATGAAAATCGAAGTAGAAGGTAATGAATTGTCATTACTGAAACGTTTACAATTTGAATTGGCGGATTTCGTGGAGAAAGAAATGAAGCACAAACTATTCGACACGAGCGACGGCGTCGCGAAAACCAATAATACGGACAGCGCCATAACTGGCAATACCTCCTATTTGTACCAGAATCTCAGTAAGACATTGAGAAGCATGATAGAAtccaatataaagaaaaatatcgagtCTTCTATAGTGAGCCAAGTGAACGACGCATGCGGCCAAGGATCCACAAAGATTTCGCCAATGTTGGCAAAGATGGTTGCAAACTTGTCCAGATATCAAccgaaaattatgttaaaacgCTTAGATATAGCAAAGGAGAATAAGCACTATAACATCAACAATGCTCACGTGTTAATGCCAGTTACGTCAAGAGGCAAGCTCGCCGGACCGTTCAGCGCGATCACTCGTAAACGTCAAAGCATACTTCCAGTGAGATACGGCGATTACAGTGTCAGTACATTGGACTCTGATTCCGATGCACcggataatgatgatgatgactaCGATGAGGATGCCATTCAGGAAACGCCCAAGACAACCAAGTCAAGAACATTCAATATGGTGACGAGACAGTCAACAGTCGTTACTGACAAACCGAAGgaaaacaaacaaaatgaaCAGAAGGGCAATTACGCGGAGTCTATAAAGATAGAGGGTGCCATAGCTGAGAATCATATATGCGGGGTATGCGGACTCACGTTTCCCACTCGCAAAGACGTCGAGATACACGTTCGTACTCATAAAATCACCGCCTGCACGGTCGTGCTGTCAAACGAGAATGTGACCTCGCCGCAGAAGCCGCTATCGGGCAAGCAGAAGATGAAGCGCTGCAAGAGGTGTCACGAGATAGTTGAGGCGCGTTTCGTGAAGTCGCATGTGTGTAAGACGGCGCTTCACAAATGTTACGTCTGCGACTCCATGTTCCGCACGAAGAACCTTCTGGCGAAGCACTTGGAGAGCCACGATCACTCGGAATTCAACATAGTAAACGCGATCGAGAACAAGAAATTTAACAACGCTGACACGTTGCTGAAAATTATATCGGTTGCTTCCACTTCGCCGCAAAAGGACCAGGCCCAGGAAACTGAAACCACGGTAAAAACGCCGACTGATGTAAACGATAAGAATGATATTCAGTCCGATAAAATAAGTAGCACAGGCGTGAAGCTGGATAGCGCTGAAAATGTGAGGAAGCCTAAAGAAACCTACACCTGTTTCGTGTGCGACAAAATTTTCACGGACGAGGAAATACTGAAGGATCATTTACAGAAGCATTGCGACGATTTGAGCGAAGGAGAGCAAAGCAATAGCAAGGAGCAATATCAGTGTGCTATTTGCGGCAATATTTTAGAATCGGATCAAGCGTTGGAAGAGCATGTTAGTAAACACTTGTTCGACGATGAGGACGACAATCCTAATCTGATTAGCATAGACGAAAACAATGATAATAAGGATAACAAGGATAATAACAAGTCGAAGGAAAGCGAGACATATCAGTGCGGTCAATGCTCAGAGACGTTTGATTCGGAGATGCTGCTGGAGATGCATATGCAGGCGCACGAGGAAGAAATCGCGATAGCAGAATGGGAGAGACAAGGAATGAAGGACTATCAATATCAATGTTCGCTTTGCGACGAATTGTGCGACACGGAAGAGGAATTGGCGGAACATTTAGACATACATAACGCAAACGCGCAAGTATGTCAGTTGTGCGACAAGCCATTCCGCACCCTGGAGGACTTACAAGAACATGTTGCAACTCATTGA
Protein Sequence: MSDKHESPSMAGRCRICLIAHGCMTSLQSDRVEAKLKDLTKCTCIDIKYEENLPGVVCHVCLYKLNMWSEFKEQFIQSNKVLLEQLEISEVSDNTIKDSSKDKSCTTKNGNVGKRKRKSGEDTVSDTEKKKSKLDVPSSEVANITCDSIISDTIYISSDENDKSSSSKPKKNANNGEESAESKMYSGPRARLLPARRGRNIERRKASTKRWVERKKALIASIGETVSDTDSIASDDVQLSPVQKARAKTNADKELERQKKMAKVLKNLETNLTEKYIAFRDKDTDSDTRRTRLSKEAHSNTLQQRDKNSLLNQIGKKSIIEKYGSSLDSSMERDNSPTPLMNDVTLDGHARNFNVQADEEAFTPHSVQSEIVVDDVTYAVTSTLILTADSSNYDKMDLYNLMKDSKSLSPDESNRQKNTDIIKAVNLCPVPNANKSNSKFRKSKSDIKFVERCMKIEVEGNELSLLKRLQFELADFVEKEMKHKLFDTSDGVAKTNNTDSAITGNTSYLYQNLSKTLRSMIESNIKKNIESSIVSQVNDACGQGSTKISPMLAKMVANLSRYQPKIMLKRLDIAKENKHYNINNAHVLMPVTSRGKLAGPFSAITRKRQSILPVRYGDYSVSTLDSDSDAPDNDDDDYDEDAIQETPKTTKSRTFNMVTRQSTVVTDKPKENKQNEQKGNYAESIKIEGAIAENHICGVCGLTFPTRKDVEIHVRTHKITACTVVLSNENVTSPQKPLSGKQKMKRCKRCHEIVEARFVKSHVCKTALHKCYVCDSMFRTKNLLAKHLESHDHSEFNIVNAIENKKFNNADTLLKIISVASTSPQKDQAQETETTVKTPTDVNDKNDIQSDKISSTGVKLDSAENVRKPKETYTCFVCDKIFTDEEILKDHLQKHCDDLSEGEQSNSKEQYQCAICGNILESDQALEEHVSKHLFDDEDDNPNLISIDENNDNKDNKDNNKSKESETYQCGQCSETFDSEMLLEMHMQAHEEEIAIAEWERQGMKDYQYQCSLCDELCDTEEELAEHLDIHNANAQVCQLCDKPFRTLEDLQEHVATH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423908;
90% Identity: iTF_01421788;
80% Identity: -