Timm004268.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- -
- Assembly
- GCA_011636585.1
- Location
- VBVO01003537.1:11984-15940[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7 3.4e+02 2.6 0.4 6 23 262 279 259 279 0.88 2 13 0.0049 0.62 11.2 0.3 1 23 284 307 284 307 0.92 3 13 0.00024 0.029 15.4 0.5 3 23 321 341 320 341 0.97 4 13 0.014 1.7 9.8 0.5 3 23 354 374 354 374 0.98 5 13 8.3e-08 1e-05 26.2 2.5 2 23 414 435 413 435 0.97 6 13 0.032 4 8.7 0.4 1 20 440 459 440 463 0.72 7 13 2 2.5e+02 3.0 1.6 2 23 531 552 531 552 0.96 8 13 2.5e-05 0.0031 18.4 0.3 1 19 561 579 561 581 0.96 9 13 0.009 1.1 10.4 0.2 5 20 598 613 596 614 0.95 10 13 0.15 18 6.6 2.5 1 22 618 639 618 639 0.95 11 13 7.8e-05 0.0097 16.9 1.1 1 23 665 687 665 687 0.99 12 13 0.011 1.4 10.1 0.0 1 23 751 774 751 774 0.98 13 13 2.4e-06 0.0003 21.6 4.6 1 23 779 802 779 802 0.98
Sequence Information
- Coding Sequence
- ATGGCCGTGGGCAGCAAGTGGGACAAGGTCTGCCGGCTGTGCTCGGAGGAGCGAAACGAGATGCTGCCCATCTTCGGCGACGAGGGCCTGCAACGCATGGTGGTGCAGAAGCTGCGTGCCCTCCTACCCGTGCTCGTGTACGAGACTGATCCGCTGCCGAAGCAGATCTGCCAGTTCTGCGCGGCCAGGTTAGATGACGCGTACGAGTTCAGGGAGCACTGTCTCAACGTTTACAGGAGCATGCACACCGTGCTGCTGAGGTTCAAGCAAACGGAGCCCGCTCAAAGATTCCTCGACGCGATGAGGAACTCGTCAGATCCCTGCCAGGTGCAACTCTGCAAAGAGAAGTCTAGAGCTCCACCGCCGTTAGTTCCTTTATCAGCTGCCCTGCCTTTCGACGACTCAGCGATGCCGATCAATCAAGCCAACCAGGATCACCTTCACGGTGCCTGCATGGAAACCTTGTCCGAATTGCCGTGCGAGGTGGAGATCAAGGAGATGAATATGGACCCGATTTTGAGCGCTGAAACCGCCGTATGCGAACCGAACAAGAAGCGCAAACTGTCGGAGCTGTTTGCCATGGACATACAAACAAAAGCGGAGTGCGTTCTTATACCTGACATGGAGGGAGCGAGAGCTCCTAAGCTGGACTACCTACAGGCTAAAAGGGAAGAGAAACGAACGAGTATTCTGGAACAAGTGCTGACCGGCAATCTGACGATGAACAATCATCAGAAACTGCAATCCAGAATGAAGTTAACTTCCGAATGGTGGTGCGCACCCTGCAACAGTTACTACAAaACGAAGGATATTCTAATGAAGCATATGCAGTTACACTGCCCGCGTGTATATACCTGTAGAAAATGTTCCATATCCTTCGATTCCGTCGAGAGCTTAGCAAAACACGAGGCCAATAATCACTTGAAGGTCGAGCTGGATTTTGCGGGAAGCTTGAATGATTGTGATCAGTGCGAGCGGCAGTTCGTAAGCTGGGAAATGTTGAGACAGCACAGACGCGATCATCGGGCTGAATCGACCGAAATCGGAAGCAACACCTGGTGCTCGTTATGCAATAGattctttCCTACAGTAGAATCTTATCAAAGCCACGTTCAGTTACATCAGACAAACTTGATGGTATCGCAGACATCATCTTCGGAATCTATAGTGACAAAAATAGCGGAACGATCGAGAGAGATCAAACGAGATGAGCAATACTACGAAAACATGAAAGCTCTCAAATGTCCCACTTGTGGGAAGACTTGTACACAGCAGAGCGCATTATCGAATCACATGCGCACTCATCAACCGAAAAAACACAAATGCGACATTTGCGGCCGATCATTTGGACTTTTTATACGCCTGGCTGGACACAGAATATCCGAGCATAAAGAACAACCAACGATGTCATCAGCTTTGTCAGCAATCGAGCAGGAAGAGGCCTTAAATGATGAGAGGGAAGCGAGAGAAGCAAGAGAAGCTAAAACTCGTGTTAAGAGATCTTACTCCGAGATAATAGAGAAAAACGACATCCCGGTAGATGACGAATCCTTAACAAAACGCATTTCTAGTGGACATAAAAACGTGGCGAGATGCGGCATTTGCTTACAATGGTTCAACGATCACACGACAATGTTAACGCACCTTCAGACTCATTCGGACAATTATACCCACAAAAGTTACATATgtcaaatttgtaaaaaatcatttaaagaaCAATCGCAGTTGTTAAAGCACGAGGCTTGTCATAAACGCCTAACGCTCGATAATGCCTCACTGTATACATCTGCTGTTTGCAACAAATCATTCACGGATAAGGCGCATCAAAAGACGCACATGGTGGATAAAACCTATCACTGTGCGAAGTGTAATAAACTCTTTTTCAAAGAAGTATTGCTGCTCGCCCACCAATGCACGGGCGAGGCACTGCTTGGAAAGAAAGTCGCCGCGAAGTCTCGGAAGAAGGCGTCGCCGCACGTTGGGAACAAGACGTACAAGTGTTCCAAGTGTGACGCGACTTTCGGAAGCTCACAGTCACGAAACGCTCACATGAAAATGCACGCAGAGTACATGCGCGGTAGTACGACGCAGGTACACGAGATTAAAGTCGAAGCAGATGACGAACCGATGCCAAAATTGAGTCCGGAGTTGGAATACAATGTATCTCCTATCGAGCCAAAGGTTGAAATCAACGAGCAGAGTGTACCGTTAGCGCCTCTCAAACGAActctcattaaaaataacaccGGgTTTCGGTGCGGTGTATGCCAATCGCCGTTCGTGTCGAGGGAACTCGCCATAGCGCATTTAAGATCCGCACATCCCGTTATGCCATATCAGTGCCCTTACTGCAAGATACGCTTCACGACGCAGTACACGTTTACCCATCATATCAAAACAGAGCATCCCGACGAGCCCGAGAAATAA
- Protein Sequence
- MAVGSKWDKVCRLCSEERNEMLPIFGDEGLQRMVVQKLRALLPVLVYETDPLPKQICQFCAARLDDAYEFREHCLNVYRSMHTVLLRFKQTEPAQRFLDAMRNSSDPCQVQLCKEKSRAPPPLVPLSAALPFDDSAMPINQANQDHLHGACMETLSELPCEVEIKEMNMDPILSAETAVCEPNKKRKLSELFAMDIQTKAECVLIPDMEGARAPKLDYLQAKREEKRTSILEQVLTGNLTMNNHQKLQSRMKLTSEWWCAPCNSYYKTKDILMKHMQLHCPRVYTCRKCSISFDSVESLAKHEANNHLKVELDFAGSLNDCDQCERQFVSWEMLRQHRRDHRAESTEIGSNTWCSLCNRFFPTVESYQSHVQLHQTNLMVSQTSSSESIVTKIAERSREIKRDEQYYENMKALKCPTCGKTCTQQSALSNHMRTHQPKKHKCDICGRSFGLFIRLAGHRISEHKEQPTMSSALSAIEQEEALNDEREAREAREAKTRVKRSYSEIIEKNDIPVDDESLTKRISSGHKNVARCGICLQWFNDHTTMLTHLQTHSDNYTHKSYICQICKKSFKEQSQLLKHEACHKRLTLDNASLYTSAVCNKSFTDKAHQKTHMVDKTYHCAKCNKLFFKEVLLLAHQCTGEALLGKKVAAKSRKKASPHVGNKTYKCSKCDATFGSSQSRNAHMKMHAEYMRGSTTQVHEIKVEADDEPMPKLSPELEYNVSPIEPKVEINEQSVPLAPLKRTLIKNNTGFRCGVCQSPFVSRELAIAHLRSAHPVMPYQCPYCKIRFTTQYTFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126946;
- 90% Identity
- iTF_01421746;
- 80% Identity
- -