Basic Information

Insect: Tetramorium immigrans
Gene Symbol: -
Assembly: GCA_011636585.1
Location: VBVO01005810.1:3241-8145[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5e-05 0.0063 17.5 0.6 1 23 144 166 144 166 0.95

2 15 0.0017 0.22 12.7 1.7 3 23 174 194 172 194 0.97

3 15 0.0005 0.062 14.3 0.0 1 23 297 319 297 319 0.98

4 15 0.034 4.2 8.6 0.3 1 23 325 348 325 348 0.97

5 15 3e-05 0.0037 18.2 2.0 1 23 379 401 379 401 0.98

6 15 0.052 6.5 8.0 0.0 1 23 416 438 416 438 0.92

7 15 0.26 33 5.8 0.2 2 23 446 468 446 468 0.95

8 15 0.0079 0.99 10.6 3.1 3 19 477 493 476 497 0.95

9 15 0.0027 0.33 12.1 4.3 3 23 505 525 503 525 0.97

10 15 0.021 2.7 9.2 0.1 3 23 532 552 531 552 0.97

11 15 7.9e-06 0.00098 20.0 0.4 1 23 560 582 560 582 0.98

12 15 0.0034 0.43 11.7 0.2 3 23 590 610 588 610 0.97

13 15 0.003 0.38 11.9 0.2 3 23 618 638 616 639 0.94

14 15 0.0028 0.35 12.0 0.2 1 23 653 675 653 675 0.93

15 15 0.0024 0.3 12.2 0.0 1 20 1106 1125 1106 1128 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5e-05	0.0063	17.5	0.6	1	23	144	166	144	166	0.95
2	15	0.0017	0.22	12.7	1.7	3	23	174	194	172	194	0.97
3	15	0.0005	0.062	14.3	0.0	1	23	297	319	297	319	0.98
4	15	0.034	4.2	8.6	0.3	1	23	325	348	325	348	0.97
5	15	3e-05	0.0037	18.2	2.0	1	23	379	401	379	401	0.98
6	15	0.052	6.5	8.0	0.0	1	23	416	438	416	438	0.92
7	15	0.26	33	5.8	0.2	2	23	446	468	446	468	0.95
8	15	0.0079	0.99	10.6	3.1	3	19	477	493	476	497	0.95
9	15	0.0027	0.33	12.1	4.3	3	23	505	525	503	525	0.97
10	15	0.021	2.7	9.2	0.1	3	23	532	552	531	552	0.97
11	15	7.9e-06	0.00098	20.0	0.4	1	23	560	582	560	582	0.98
12	15	0.0034	0.43	11.7	0.2	3	23	590	610	588	610	0.97
13	15	0.003	0.38	11.9	0.2	3	23	618	638	616	639	0.94
14	15	0.0028	0.35	12.0	0.2	1	23	653	675	653	675	0.93
15	15	0.0024	0.3	12.2	0.0	1	20	1106	1125	1106	1128	0.94

Sequence Information

Coding Sequence: ATGGACGTCACTGGGGATCTAAATCTGCAATGGGTGGGAGATGTGGAGCTTCACGAAGAGGTCATATGCGGCCTGGAGGCACAGCTGGTCGCGTCGGAGGAGGAGGTGATTGGAGCTTGCGAGGAGGTGGTGGTGGAGGAGACCGTTGAGTCCGTTCCCGACGTGGCGCCTACCACCGAATCTGAGATACTGATGGTACCTCAAACAAATGACATGGAGTCGATCTACATAGTGCCACAGGATCAGGGGCACGACTACCTGAATATACAGGTAACTGAGGAAGTAATAGCTGACAACTGGGACAGGCCTGGTCCAGATGATGGGGTCGAGATTCCAGAAACTAAGGTGGCTCACGACAACCTCTTGGAGTATGATGACATGGAGATACCATTGCCGATTGATCAGGATTCTTACCAGAATACCCGGCCGTATCCCTGCGACTTTTGCAGCCGCAGGTTCCGAAAGAAAGCAAATTTGATGAATCACATTGTGGCACATCAGACAGATCGGCCGTATGGCTGTAATTTATGTGGGTCCCGCTATGTACGCAAGTGTGATCTAAACAATCACCTGAAGGTCCATGCGTACGCACCGTCTTCGCAAGACGGCCTCGAGGACGACTTGAATGATGAGGATTCGCTGGTTGCCGAGGAGGAGGACGTGACGACCGGCGCCAACAAAGGCAGGCGCAAGAAAGTACAATCAAGTGCGCCGCGCAAACGGAAGAACAACACCGCTGCTATGTCGAAACGCAACGCCGAGGATATCAAGATAGAGATGGGcaaCGGCAATTATGCGTCTAGTTCGACGTGGCAGATGGAGGAGATTTCGTCTGTCACGAATAGACAACAGCCGCAACAGTGGCCTGTAACTGATCCAACAAAGCCGTACGTTTGTCAATCATGTGGCATCGGTTTTGCTAGGGAGAAAGCACTCGCATCACACGCGCGCATTCACGGTGGCGACAGTCCGTTTGAGTGTACCTCATGCGGCGAAATGTTCTGGGATATCAACCGTTTGCGGGAACATATACGTAGTAAGCATGGCGGCACTATACCCCAAGTACAAATATCTGATGCAGAGGAATACGACAATGACGCCACTTACACGGGTGATAACGAGAGGATCGGCGACTTTTATTGTAACACCTGCGGTGTACCGTTCCATCGTTTAGATTTACTTAAGCGCCATCAGAaAATTCATATAAAGCCGGAGACGGACGCAATGGAGGGTTCCAGTCAGCATCACATGTGTAATGTTTGTGGAGAAGAATTCGAAGAGGCTCTAGCACTGTTGGCACATGCAGAACTTCATGCTTCAAGatCTCCTAGTCGTCGTTGCCTAGTGTGCGGGGCAAGATGCCGTGATGAAGCAGAAGTTGCGGAGCATGTACGACAGAATCACGCCGAGAACGCGCCGGAAAACTTTTGTACGCTGTGTGGAAAAACGTGCAAAGACAAGCGCAGTTTGTTGAAACACTCTTGGATACACAATGTCGACAAGACGTTCGGCTGTTCAAAGTGCACGAAGCGCTTCCACAGTAAAGCTCGTTTGCGAAGACACATGGTATCGCATCGCAATAAAATGGTGGCTTGTGACGAGTGTGGCATGGAATTTCCCGATGGACGGGCTCTTGTAAGCCACCGTCATTCACATAGGGAATTGGGTGGTCGTACTTTTCCATGCCGCGAATGCGGGAAAACCTTTGGTAGTCGCAGTTCACAGCAGATTCATATACGTATCCACACTGGTGAGAGGCCCTATGGTTGCCGATTCTGTTGGAAAGCTTTTGCAGACGGTGGTACCTTGAGGAAACACGAACGCATTCATACTGGCGAGAAACCATACGGATGCGCGATCTGTCCTCGGGCATTTAATCAGAGAgTGGTTCTCCGGGAACACGTGCGCGCCCATCATTCCGGTCCAGATCCAAAATATGTGGGCAGTGCAACACCGTATTTGTGTAAAGTATGTGGCGAATCATGCAGCACGTCCGAGGAGATAGTGGCACATATAGTGCAGCATTGCGATGATAACACTGCGTTGAAACGCCAGCCGCAAACCGGCCCGCGCAAGTATAAGAGAAGACGCAAAACGAAACTAGAGACGAATACAGTAGTACGTAGAGACGAGTTTACATTCGATATGATGGAAAATAGCGGTGGCACCGGCGCTGGTACCGGTAGTGGTACCGCCGGTGGTATCAGTGGAAGTGctggtggtggcggcggcacTGGCACTGGTACTGGCGGTTCCGATTCGGAAGACAATACAAAACGGAAACTTGGCAAGAAGAACAAGCAACGATCGAACGTCGAGGAAGGCTATCAGAACGTGCTGAAAAGTTTTGAAAGCTCTCTACAGAACATAAACTCGATCGTGAGTAACTCCAAGTTAAATGCATCCAAATCGAAGATTTCAAAGAAGAAGCTACGCAAGGAAGAGAAGAAGCAGGAGGCACAGGCGTCGAATCAGTCGGGCCGGCCGAAGATGATCCACACACAGAAAACGCGGGTGCCGGTAGAGGTGGGCAGTGATGGCGCGAAGAAGGGCCAGAAGACAAAGACAATGGTGACCCGGACGCCGAAGGTGATGCCGAATGAGCACAAATCCGGCATCTTTCCGGGTGGCGAGCGGAATCGGCCGCGCACAAAGAACGTTAGTTATCATGTTGAAGGTAAATCGCAGCTCACGCCGGCGACATTTTCGGCGAAATCTGCAAAGGAGAATACGTCTACGATGTCGCAGCCATTACTGGTGAACATTAAGCAAGAGCCAGGTGTGCAAAAGGCCGCTAGTGACAGTCACAGAAACAACAATGGTAATATACTAGCTCTTGGTAAATCTCAAGTGTCATCAAACAAGAGAAAATCGTCGGGCACCACGAAGAGAGCTAAGAGACAGAAGCCCACAGCAATGAAGCAGGAATTAAACGCATCGATTCAGACAAACGCGGCagagcaacagcaacagcagcagcagcagcaccaccatcaccaccagttacggaataataataacaataataatactaacaaCAATAATATGGAGGACAGCAGCGATCCAGCACGACTGATGGACCACGCAGTGGACGGCAGTAATCTGGAAGTAGCGTTTGAAGCAAGCGTCATTACCGCTCAAGATGACGAGGCAGAAAGCATATTGCCACACGACGCTGTACAAGAGGTGGACAATCGGGACAACGTTAAGCTCAGTGTCAAGGTGGAGTCGGCACCGCAAACGAGGATGCTCGTACATAGTGTTATCGCGCCAGTAGACGATGTTCCGGAAACGATAATACCGGACACGGTGGAGTATACGTGCGAGATGTGCTCTGCAGTGTTCTCCAGTCGTGCTGAGTTATTGGTGCACGTGCCGATAcacatttga
Protein Sequence: MDVTGDLNLQWVGDVELHEEVICGLEAQLVASEEEVIGACEEVVVEETVESVPDVAPTTESEILMVPQTNDMESIYIVPQDQGHDYLNIQVTEEVIADNWDRPGPDDGVEIPETKVAHDNLLEYDDMEIPLPIDQDSYQNTRPYPCDFCSRRFRKKANLMNHIVAHQTDRPYGCNLCGSRYVRKCDLNNHLKVHAYAPSSQDGLEDDLNDEDSLVAEEEDVTTGANKGRRKKVQSSAPRKRKNNTAAMSKRNAEDIKIEMGNGNYASSSTWQMEEISSVTNRQQPQQWPVTDPTKPYVCQSCGIGFAREKALASHARIHGGDSPFECTSCGEMFWDINRLREHIRSKHGGTIPQVQISDAEEYDNDATYTGDNERIGDFYCNTCGVPFHRLDLLKRHQKIHIKPETDAMEGSSQHHMCNVCGEEFEEALALLAHAELHASRSPSRRCLVCGARCRDEAEVAEHVRQNHAENAPENFCTLCGKTCKDKRSLLKHSWIHNVDKTFGCSKCTKRFHSKARLRRHMVSHRNKMVACDECGMEFPDGRALVSHRHSHRELGGRTFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKYVGSATPYLCKVCGESCSTSEEIVAHIVQHCDDNTALKRQPQTGPRKYKRRRKTKLETNTVVRRDEFTFDMMENSGGTGAGTGSGTAGGISGSAGGGGGTGTGTGGSDSEDNTKRKLGKKNKQRSNVEEGYQNVLKSFESSLQNINSIVSNSKLNASKSKISKKKLRKEEKKQEAQASNQSGRPKMIHTQKTRVPVEVGSDGAKKGQKTKTMVTRTPKVMPNEHKSGIFPGGERNRPRTKNVSYHVEGKSQLTPATFSAKSAKENTSTMSQPLLVNIKQEPGVQKAASDSHRNNNGNILALGKSQVSSNKRKSSGTTKRAKRQKPTAMKQELNASIQTNAAEQQQQQQQQHHHHHQLRNNNNNNNTNNNNMEDSSDPARLMDHAVDGSNLEVAFEASVITAQDDEAESILPHDAVQEVDNRDNVKLSVKVESAPQTRMLVHSVIAPVDDVPETIIPDTVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730239;
90% Identity: iTF_01423840;
80% Identity: -