Timm000956.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- -
- Assembly
- GCA_011636585.1
- Location
- VBVO01003756.1:8735-13555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00051 0.064 14.3 1.2 2 23 7 29 7 29 0.96 2 17 2.6e-05 0.0032 18.4 1.6 1 23 33 55 33 55 0.99 3 17 0.00031 0.039 15.0 2.3 1 23 61 84 61 84 0.96 4 17 3.3e-05 0.0041 18.1 4.5 1 23 91 114 91 114 0.97 5 17 0.031 3.9 8.7 7.7 1 23 149 171 149 171 0.97 6 17 0.00078 0.097 13.7 1.8 1 23 175 198 175 198 0.96 7 17 1.2 1.5e+02 3.7 0.8 5 23 208 226 205 226 0.91 8 17 6.7e-06 0.00084 20.2 4.1 1 23 232 254 232 254 0.98 9 17 8.7e-05 0.011 16.7 3.1 1 23 411 433 411 433 0.96 10 17 1.9e-05 0.0023 18.8 1.5 1 23 439 461 439 461 0.98 11 17 0.053 6.7 8.0 2.0 1 23 468 491 468 491 0.94 12 17 8.2e-07 0.0001 23.1 1.3 1 23 497 519 497 519 0.98 13 17 0.087 11 7.3 4.0 2 20 525 543 524 547 0.82 14 17 3.6e-05 0.0045 17.9 1.3 1 23 554 576 554 576 0.95 15 17 7.8e-07 9.7e-05 23.2 1.2 1 23 580 602 580 602 0.99 16 17 0.022 2.8 9.2 1.1 1 23 608 630 608 630 0.94 17 17 8e-06 0.001 20.0 0.6 1 23 636 658 636 658 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAGATAAGAAATACGTGTCCATTTTGTGACAAGCATTTTGGCAATGCAAAGAAGGTTGAGCGACATGTGAGATACGTCCATCGTAAACCATATCAATGCGACAAGTGTAAAAGAGCTTGTTACACGCCAAGTGCACTGGAGGAGCACAAAAGAATACACCGGCCGGATTATTTCTTCGAGTGTGAGATCTGTCACGTAAAGTACAAAAGTGAAGACGGTCTGAAAAGACACCACATTCGCATCCATAGTGATCACGAGTCAAAATTCATTTGTGAACATTGTGGTCGCAGTTATAAACTGAAGATTGACCTGACGCATCATATGAAGAGAACTCATGTGTTGGAACTGCAAATCTGTCGTTTCTGCGGCAAAAAAGTTAAGGATGTCAAGGGCCACGAATGGCGACATCAAAAGCGAAATCGTGAAATTAAGTATGAATATCCATGTCACTTGTGCCGCAAGAAGTTTCATCACAGAAGCAGATTGGATAATCATTTAATGTTGCATAAAAAAGGTTTCAAGTGCGAGATTTGTAACAAAGAGTACAGCGGCACTCGCGAACTCATGAGCCACAAACGTTTCAAGCACAACCAGACAAACATCTCTACTTGTATCCTGTGCCGCAAAACATTCTTATCCATTAGCAATTACTATCAGCATGTGCTTACCCATGCCAGTATACGGCCATATAAATGCGACGTTTGCGAGAAGGACTTTACGCAACGTTCCAGTTTGCTAAGGCACAGAAAACATCATCCTGGGCCACTGCCGCCATTATTATCATCGCATCCACAGATAGCCGACCTCGCCAGAAATTtccttgaaaaatttcaaagtgactacattgataaaaattttgtattggATGCTCGgtaCAATCAGCTAGATCCACTCTCGCCAACTTTTCTGATAGTAAAACTGGAAGACGATTATTTTCGCATCCCAAAATCATTGAGCGTGTTTATGATGAAAGAACCGCCGCCTACCgaggaaaataatttgaaagctGAGTCgaaagaagatgaagaagTGAAAGGAAAGGCTAATCGCGAcgagaaaaatcaaaatcgCATTGAAACTAGGAAGAGAAGTAAAACCGTCATCAACGATTTGAACGATATGGACGATTTGGATGATGCTCCGTTGGATTTCAGAAAACGGTGCAAAGACGGACTCTCAAAAACGCGATCCGGCAAGCATACGACTAGTCCAAAGAAGAAATCACATATATGTGAGATCTGTTACATCACATTCGACCGCAAGAGCAAACTCACTAGTCACATGTTCAAGCACAGCAACTCACGGCCGCACAAGTGCACAATCTGCTCCAAGGGCTTCAAGACCGGTGCATATCTTTCTAGGCATATGGAGATCCATGACGAGCCCGCGCAGCTTCATGCGTGCACCTTGTGCGACTTCAAGGCGCGCACAAAGCCGTACTTGAAGATACATTATATTCGCAAGCACACCGAGGACTACAACTATAGCTGCGAACAATGCGGCAAGATGTTCAAGGTGCAGTCAGACTATACGACACACATGAAAGACCACGATACGGAGTCCTGTGTTTGCGATATATGCGGCACGTCCTATCCCAGCAAGAGTTCCTTGTACTTCCACAAGCATTACAAGCACAAGACGAAGATTAAGGAGTTCGAGTGTCAGATTTGCAGGAAGCGCTTCAAGACCCAGAAGAATCTTGACAGTCACGCTGAGCTGCACAAGATGAAGTACGTTTGTGAGCAATGCGGGATGGAGTTCAAGTTCAAATACGGTCTCACAAAGCATCTCAGGACGCACTCGGGCGAAAAGTCATATCTCTGCGCGATATGCGGCAAGACTTTCGGCTGTCTCAGCTCGCAAAAGATTCATCTGCTTACCCATGTCGGTGAGCGACCTTACGTCTGTGACATTTGCGGCCAGAGCTTCACTCAACGATCGCCGATGATGTTGCATCGGAAGAAGCACCCTGGTGTGCATCCACCGCCACCGCccataaaaattacgaatctCCTGCACGGTGTACAGGACAAAATTGTTGTGAATAAAAGTGCCAAGTGA
- Protein Sequence
- MEEIRNTCPFCDKHFGNAKKVERHVRYVHRKPYQCDKCKRACYTPSALEEHKRIHRPDYFFECEICHVKYKSEDGLKRHHIRIHSDHESKFICEHCGRSYKLKIDLTHHMKRTHVLELQICRFCGKKVKDVKGHEWRHQKRNREIKYEYPCHLCRKKFHHRSRLDNHLMLHKKGFKCEICNKEYSGTRELMSHKRFKHNQTNISTCILCRKTFLSISNYYQHVLTHASIRPYKCDVCEKDFTQRSSLLRHRKHHPGPLPPLLSSHPQIADLARNFLEKFQSDYIDKNFVLDARYNQLDPLSPTFLIVKLEDDYFRIPKSLSVFMMKEPPPTEENNLKAESKEDEEVKGKANRDEKNQNRIETRKRSKTVINDLNDMDDLDDAPLDFRKRCKDGLSKTRSGKHTTSPKKKSHICEICYITFDRKSKLTSHMFKHSNSRPHKCTICSKGFKTGAYLSRHMEIHDEPAQLHACTLCDFKARTKPYLKIHYIRKHTEDYNYSCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGTSYPSKSSLYFHKHYKHKTKIKEFECQICRKRFKTQKNLDSHAELHKMKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRKKHPGVHPPPPPIKITNLLHGVQDKIVVNKSAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01405952;
- 90% Identity
- iTF_01405952;
- 80% Identity
- -